Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00929 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATTGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACGGACGTCTTGGAAGAGGATGAGTACAAAGTATATTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAAACTAAAACTTGGGACATACTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCTCTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTTTCATTGGAGGGACAAAAAAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGCTCTCTTATTGTACTGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTACAGAACTTCTCCATGTCCTTTCTCCAGTAAACTCACAGCCTTCTCAAATGAGATACCTTCACTATATTTCTAGGAGAAATCTAGGTTCTTATTGGCCTATACCTGATACACCTCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAAGGGTGTCGGCCTATCATACGCATTTATGGTCCGGACCCTTTAACACCAGGAAACCGAAGTCCAAAACTTTTTTTTTCCAGTGCAAAGATGGAAAGAAATGGTCTCCAGTATCTACAGGCAGCAAGCAGAGTTGTAAAAATGGATGTTCGTTGTCATGTTCAAGGCGATGTTGTTCTTGAATGCATCCATTTAGATGGAGATCTAATACACGAGGAAGTAATGTTTAGAGTTATGTTTCACACAGCCTTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTCATAAAAATTTTAGAGTAGAGGTACATTTTCTGAATGCTGAACATATTGTGCCAAACCTCACCTCAGCAGCAAAAAGTGATGACAAAATCGAAATCGAAAGCAACTCGACTGAGGAGTTTTTCGAAGTGGAAGAAATATTTAGCAATTTTGTTGACGTGCAGGAAGTAATGAGGGATTATGATGTTCAAATGGTACATGCGAATGAAACGGATGCTATAGACAATCAAGCAGCGTTGAAGGAAGATGCAGACCCGCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCATGACTTTGACAAGAAGATGGATTGTAACGTTGAAGCAGTGAAGGACATCACTGTTGATGATGTGACTTTCAAAACAGATGAAAAAATGGACTCTGGTCTTCATGCCGTGAAGGACATTGTTGTGAATTATGGAGATAACAAGCCAAATCCTTTACTATTTTCTGGTAATGTACTGAGACGTACAGGGATCAAGGAACTGATAGACGATGCTTATGACATGTTGGAAGGGGTGGAGCATAAAGGGTATGGAGAAGATACTGCTAATCCACACGTTGAGTTAAAGCTTCCTTCAAAAAAGATGGAAGCCGATGCGTGGAGGCTTAAACAGAAGCCCAAACAGCCTGAAAAAGGGGACTTTCTTGTAAAACAGGCAAAACCAAATACTCTTCCACCAGCTCTTCAGGCTAACACATCTTTCTTGCATGTATCATCTCCTAAAGTTTCTTTGTCACCCTCTTCATATTTTCATATAAATGCAAGATCTCCTCCTCCACCTCCACCACCACCACCTCCTCCACCTTCCAATCACTTGGCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCACCTCCACCTCCACCTCCCTTACCTAGAGCTCTACCACAATTATCCCCCATACGGCCACCGGCTTCACATGGAGCTCTGCTTTCTCCACGCCTAACAAATGCTAGAGCTCTGCCACCACCCCCTCCCCCACCTCCTCCAATTCAGAGGACAGCTTCTGCACATTTAACCCAAGGGCGACAGGCTTTAACATCTCCAACAACATGTGTTGTATCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACTACTGGTCCTCTTCCACTGGTTCCTTCTTCCAGATCTCCAGGAGGTATATCTCCACACCTAGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACACCATCTATAGTAATGAGGGGACGTGGGTTCTCGCGGAGCACAGGGGTGACTGCTAAAGTGCCTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTAACTCGGGTACCAAAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGACTGTCCCTAAACCTATTGCTGATTCAGGAGGTAAATCCGGAGGACGAAGAAAGTCAGTTGGATCAAAATTGGACAAAATTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTCGGATGCCACTGTCTGACATGATGGCAGCAGTGCTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAAGAGATGGAGCTTCTCAAGGGATACTCTGGTGACATGGATAAACTTGGCAAGTGCGAACAGGTCGTTGCTTCAAAGTCACCATCACTTCTTGAATTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTAGTTGCTTCTGAAAGTGATGGCCCCATCTCTCAAACTTTTCGTAAGATATTGAAAGGATTTGTTAATCTTGCCGAGAAGGAGGTCGAATCTGTGACCGTTCTTTACTCGGTGGTGGAGACCACTGCATGGTTGCAGGGTAGAAATGCTGATGCACTTGCTCTATATTTTGGCGAGGATCCTTCCCGTTCTCCATTTGAACAAGATTGTCCTGATGGATGGATGATCCACAAGTTGTTGAATGCAGGTTCTGTTCCTGTAGAACCTTTGAATCCATGTAACCAACATTGTCTACCTCTCCAGAGTGTATTTGAAGAGCCTGTCTTCCTTCCAGATCCACCCAGTAAACCGTCTTACAACTCTTGA 3237 43.44 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTDVLEEDEYKVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTWDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWFSLEGQKNVLLMNCERGGWPILAFMLSALLLYCKQYEGEQKTLEMVYRQAPTELLHVLSPVNSQPSQMRYLHYISRRNLGSYWPIPDTPLILDCLILRELPMLDGGKGCRPIIRIYGPDPLTPGNRSPKLFFSSAKMERNGLQYLQAASRVVKMDVRCHVQGDVVLECIHLDGDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVLWDAKEQFHKNFRVEVHFLNAEHIVPNLTSAAKSDDKIEIESNSTEEFFEVEEIFSNFVDVQEVMRDYDVQMVHANETDAIDNQAALKEDADPPTFQRCKSFGGSHDFDKKMDCNVEAVKDITVDDVTFKTDEKMDSGLHAVKDIVVNYGDNKPNPLLFSGNVLRRTGIKELIDDAYDMLEGVEHKGYGEDTANPHVELKLPSKKMEADAWRLKQKPKQPEKGDFLVKQAKPNTLPPALQANTSFLHVSSPKVSLSPSSYFHINARSPPPPPPPPPPPPSNHLAPKSSSLVCGNTPKHSAPPPPPPPPLPRALPQLSPIRPPASHGALLSPRLTNARALPPPPPPPPPIQRTASAHLTQGRQALTSPTTCVVSSSLPSPICEAPSPPQPTTGPLPLVPSSRSPGGISPHLGAKGVSSSTDVKTPSIVMRGRGFSRSTGVTAKVPQRSSLKPLHWSKVTRVPKGSLWEELQRCGDSESAPEFDVSELETLFSVTVPKPIADSGGKSGGRRKSVGSKLDKIHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDMDKLGKCEQVVASKSPSLLEFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISQTFRKILKGFVNLAEKEVESVTVLYSVVETTAWLQGRNADALALYFGEDPSRSPFEQDCPDGWMIHKLLNAGSVPVEPLNPCNQHCLPLQSVFEEPVFLPDPPSKPSYNS 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9535938 9545722 + Carg04742-RA Car13g00929 159846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00929 1078 Pfam Formin Homology 2 Domain 762 910 IPR015425 -
Car13g00929 1078 Pfam Formin Homology 2 Domain 910 1024 IPR015425 -
Car13g00929 1078 MobiDBLite consensus disorder prediction 582 601 - -
Car13g00929 1078 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Car13g00929 1078 MobiDBLite consensus disorder prediction 577 738 - -
Car13g00929 1078 ProSiteProfiles Formin homology-2 (FH2) domain profile. 757 1078 IPR015425 -
Car13g00929 1078 MobiDBLite consensus disorder prediction 670 697 - -
Car13g00929 1078 Coils Coil 937 957 - -
Car13g00929 1078 MobiDBLite consensus disorder prediction 654 669 - -
Car13g00929 1078 MobiDBLite consensus disorder prediction 698 714 - -
Car13g00929 1078 MobiDBLite consensus disorder prediction 615 635 - -
Car13g00929 1078 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00171 Car13g00929 CCT
Car10g00196 Car13g00929 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00196 Car-Chr10:937448 Car13g00929 Car-Chr13:9535938 5.12E-43 dispersed
Car13g00929 Car-Chr13:9535938 Car19g00151 Car-Chr19:1331078 5.68E-31 dispersed
Car01g00745 Car-Chr1:4513928 Car13g00929 Car-Chr13:9535938 1.73E-53 wgd
Car11g00171 Car-Chr11:942519 Car13g00929 Car-Chr13:9535938 1.85E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00929 - - csv:101221127 1184.09