Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00313 ATGATGTCGGACGGATTGATCTTCAACCGATCTCCAGGTCACGCCAACATGCTGTTTTTTGGGAGTGGCGATTCCATTCTTCGAGGATCATGTTTCACGAAGGGGATGGAGGAAAATTCGAAGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTCGATGATGACTACTACGATGACCAGCCGCCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGGCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTCTGGTTTCAAAACCGCCGAGCTCGATGGAAGACAAAACAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTTGTTCTAGCTACGACTTTATGGCCAAGGAGAATGAAAGACTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAAATCCGAGCCAATTTTGGAAGATCAACTCCTTGTTTCTGTTGTGCAACACAATATGAAGATTGATGACCATCATAGTTGCAGGAGCAATGGTAGCGCTGTGCTGGATGAGGATGGTCCTCAACTCTTGGACAGTGGGAATTCATACCTCCTGAGCAATGACTATGATGGCTGTGTGTTGCCAGTTTTTGGAGTGAACTCAGAGGAGGAGGATGTGAGTGACGACGGTCAGGGCTACTTCTCGGATGTTTATACAGCAGCCGATCAGCAGACTCACGAGGCAGAGCCATTGACCTGGTGGGACTGGTCGTTGTAA 834 47.84 MMSDGLIFNRSPGHANMLFFGSGDSILRGSCFTKGMEENSKRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFCSSYDFMAKENERLKAEVASLTEKLQAKEVVESSFQAKKSEPILEDQLLVSVVQHNMKIDDHHSCRSNGSAVLDEDGPQLLDSGNSYLLSNDYDGCVLPVFGVNSEEEDVSDDGQGYFSDVYTAADQQTHEAEPLTWWDWSL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1688606 1690865 - Carg02294-RA Car15g00313 162150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00313 277 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Car15g00313 277 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Car15g00313 277 Coils Coil 139 166 - -
Car15g00313 277 MobiDBLite consensus disorder prediction 42 62 - -
Car15g00313 277 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Car15g00313 277 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g00587 Car15g00313 CCT
Car11g01382 Car15g00313 CCT
Car04g02619 Car15g00313 CST
Car04g01668 Car15g00313 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00767 Car-Chr13:8605745 Car15g00313 Car-Chr15:1688606 8.12E-42 dispersed
Car15g00313 Car-Chr15:1688606 Car18g00118 Car-Chr18:635442 9.66E-38 dispersed
Car11g01382 Car-Chr11:11285730 Car15g00313 Car-Chr15:1688606 1.27E-76 wgd
Car14g00587 Car-Chr14:3198557 Car15g00313 Car-Chr15:1688606 5.11E-71 wgd
Car15g00313 Car-Chr15:1688606 Car04g02619 Car-Chr4:20454193 3.56E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4789 PF00046 Homeodomain 4.60E-17 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00313 K09338 - csv:101210106 465.692