Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00884 ATGGCGTTTTTACCCATCAACTCATCCAGCTTGGATCTCTCGATATCGATGCCCGGCTTTGCTTCTTCCCCGCCTCGTCCTTCAGCGAGAGTGAGACGAGGAGTTGATGCAGCGAAAGAATTGGACATGAACCGGGTACCGGATGTAGGAGAAGCCGCGGAGGAAGAACAAGCGGTGGCGGCGAGGACGGAGGAGGAAGAGGAGAGCTGCAGCATTAACAATGGAGGTGGTCAGCCAAAGAAGAAGCTTAGTCTATCAAAACATCAGTCTCGTCTCCTTGAAGATATCTTCAGGCATAACCATTCATTAAACCCTAAGCAAAAGGAAGCCTTGGCTATGGCACTTCAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATGCCAGTATTTAAGGAGGTGGTTTGGCTCATTAACGGAGCAAAACCGCCGGCTGCGGCGGGAACTGGAGGAGCTCAGAGCTACTAAGGTTGCTGTCCCAGCCGTCGTCTCAAGCCACGGCCGACAGCCACCCCTGCCGGTGTCCACTATAACCATGTGTCCACAGTGCAAGCGCGTAACCGCTGCCACTATAACATCTAGTCCGGCTGCAGCCACCCAGACCGCCATTGCCACCACTGCAACGCCATCGAAGGCGGTTCGGTCAGCCCTGAAGTTGCAGCAGCCGTCGCAAGCTTGA 720 54.31 MAFLPINSSSLDLSISMPGFASSPPRPSARVRRGVDAAKELDMNRVPDVGEAAEEEQAVAARTEEEEESCSINNGGGQPKKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMECQYLRRWFGSLTEQNRRLRRELEELRATKVAVPAVVSSHGRQPPLPVSTITMCPQCKRVTAATITSSPAAATQTAIATTATPSKAVRSALKLQQPSQA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5258409 5260863 + Carg24910-RA Car15g00884 162721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00884 239 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Car15g00884 239 Pfam Homeobox associated leucine zipper 136 169 IPR003106 GO:0006355|GO:0043565
Car15g00884 239 MobiDBLite consensus disorder prediction 32 69 - -
Car15g00884 239 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Car15g00884 239 MobiDBLite consensus disorder prediction 1 85 - -
Car15g00884 239 Coils Coil 149 169 - -
Car15g00884 239 Pfam Homeodomain 80 134 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02028 Car15g00884 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00045 Car-Chr4:243721 Car15g00884 Car-Chr15:5258409 3.65E-71 dispersed
Car15g00884 Car-Chr15:5258409 Car06g00089 Car-Chr6:617525 2.37E-47 dispersed
Car15g00884 Car-Chr15:5258409 Car04g02028 Car-Chr4:16323750 1.38E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4846 PF00046 Homeodomain 1.60E-16 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00884 K09338 - csv:101206325 256.914