Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00121 ATGGCGTCTTCCTCCTCCCATTCCCCATTTACCACTTCCCCAAGCTTCCTTCCTACTCCAACCTTTACCCTTTTTATCATCACAATGAAACCCTCCTCTTCATTCTCGTCTAACTCAGCTGCGGCCTCCTCAATGTGCAAGGAATTTCAAATGGGCATGTTCGTTTTGGCTTTCTCATCCATTTTGCTATCGACCCTTTTCGGTTCTTGCACTCTCGCTCTTACCCCAGATGGCCTAGCGTTGTTGGAAATTAGAAGCGCTTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAGTCTCCCTGCAAATGGACTGGTATATCTTGTCACCTTGAGGACCAACGGGTCAGCTCAATTAACTTACCTTACATGCAACTAGGAGGGATTATTTCTCCTAGCATTGGAAAACTCAGTAGATTACAGAGACTGGCACTTCACCAAAATGGCTTACATGGATATATTCCTAATGAAATCACTAAATGTATTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTTCAAGGTGGTATACCATCAGATATTGGAAGCCTTTCTGCTCTTACAATACTGGACTTATCAGGCAATTCGTTAAAGGGTGCTATTCCATCATCCATTGGTCGTCTCTCGCTTCTGCGCCATCTGAATTTGTCCACAAACTTTTTCTCTGGGGAGATACCTGATTTTGGAGTTCTAAGCACATTTGGAAGCAATTCGTTCGTTGGGAATCTAGATCTCTGTGGTCATCAAGTTAACAAGGCGTGCCAAACGTCGTTGGGATTCCCGGCAGTGTTGCCCCATGCTGAAAGCGATGAAGCTTCAGTGCCTGTGAAAAGACCTTCACACTACATCAAAGGAGTATTAATTGGTGCAGTGTCCACCATGGGAGTTGCATTTGTAGTACTCGTTCCATTCTTGTGGATCCGTTGGCTATCAAAGAAGGAACGAGCTGCTAAACGATACACAGAAGTCAAAAAACAATTGGTTAACGAACCAAACACAAAACTTATTACTTTTCACGGCGACCTACCGTACCCGTCATGCGAGATCATCGAAAAGCTGGAGTCACTAGAGGAAGAAGACGTTGTTGGTTCAGGTGGATTCGGGATCGTGTACCGAATGGTCATGAACGATTGTGGGACATTTGCTGTTAAAAAGATTGATGGAAGCAGAAAAGGTTCTGACCAAGTGTTTGAGAGAGAGTTGGAGATTCTGGGTTGCATCAAACATATAAACTTGGTTAATTTGAGGGGTTATTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTCCTTGCAATGGGCAGCTTAGATGATTTTCTGCATGAACAGGACTCAGAAAGACGACCTTTGGATTGGAGAGCTCGTTTAAAGGTAGCATTGGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTAGTCCAAAGATCGTGCATCGTGACATTAAATCGAGCAACATTCTTCTTGACGAGAACTTGGAGCCTCATGTATCTGACTTTGGACTAGCCAAGCTTTTGGTTGATGAGGATTCTCATGTCACAACTGTTGTTGCTGGAACATTTGGTTATTTGGCTCCA 1596 43.61 MASSSSHSPFTTSPSFLPTPTFTLFIITMKPSSSFSSNSAAASSMCKEFQMGMFVLAFSSILLSTLFGSCTLALTPDGLALLEIRSAFNDSKNLLGDWEASDESPCKWTGISCHLEDQRVSSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNEITKCIQLRALYLRSNYLQGGIPSDIGSLSALTILDLSGNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFVGNLDLCGHQVNKACQTSLGFPAVLPHAESDEASVPVKRPSHYIKGVLIGAVSTMGVAFVVLVPFLWIRWLSKKERAAKRYTEVKKQLVNEPNTKLITFHGDLPYPSCEIIEKLESLEEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEQDSERRPLDWRARLKVALGSARGIAYLHHDCSPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDSHVTTVVAGTFGYLAP 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 643503 648690 - Carg06686-RA Car18g00121 165823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00121 532 Pfam Leucine rich repeat N-terminal domain 76 113 IPR013210 -
Car18g00121 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Car18g00121 532 Pfam Leucine rich repeat 167 224 IPR001611 GO:0005515
Car18g00121 532 ProSiteProfiles Protein kinase domain profile. 361 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00121 532 Pfam Protein kinase domain 362 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00121 532 Coils Coil 315 335 - -
Car18g00121 532 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00167 Car18g00121 CCT
Car11g00135 Car18g00121 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00121 Car-Chr18:643503 Car07g00150 Car-Chr7:889423 3.51E-83 dispersed
Car10g00167 Car-Chr10:808712 Car18g00121 Car-Chr18:643503 0 wgd
Car11g00135 Car-Chr11:764403 Car18g00121 Car-Chr18:643503 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89502 PF00069 Pkinase 1.80E-31 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00121 - - cmax:111490257 1003.43