Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car20g00616 ATGGATTCTCCTTCCCGTTCTCTGTTTCCCTTCACCGTTTTCCCCCATCCCTCTCCCTCCCATTCTTCCCTTCCGCCCCCCAATTCCCGCCGGAAGCGTACTAAGTTCATCAAACCCACCACCGCCGCCGCCCCTCTTCATTCTCCCTCCACTCCCAAGTCCAAGCACGCCAAGAAACCGGACCCTACCGCTCCCAAGATCACTCGCCCCTGTACTGAGTGCGGCAAGACGTTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCATCCTGAGCGTCAATGGCGAGGAATCAATCCGCCGCCGAATTTCCGCCGATCGACTGCCACTGACGAAGATCACGAAATCGCTGCCTGTTTGATTATGTTAGCGAATGGCCCTAATGCGATCGATCCAACTGAAGCGGTTACTGAAACGGATGGTGATTGTCGAGAAAATCAAGAATCGGCGGCGTTAGTGTTTGAACAGATAGGCAGCCGGAAGAACGTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGATGATGATCATCATCATGGTTATTTGGACTTGAATTTGCCTCCTCCAATGGAAGACATTGAAGAACGTTCATCATCCTATTGTTCAGGGATTGTTTTGGATCTGAGATTAGGGCCTAATTAA 660 50.61 MDSPSRSLFPFTVFPHPSPSHSSLPPPNSRRKRTKFIKPTTAAAPLHSPSTPKSKHAKKPDPTAPKITRPCTECGKTFWSWKALFGHMRCHPERQWRGINPPPNFRRSTATDEDHEIAACLIMLANGPNAIDPTEAVTETDGDCRENQESAALVFEQIGSRKNVKEEEEEEEEEEEEDDDDDHHHGYLDLNLPPPMEDIEERSSSYCSGIVLDLRLGPN 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3450662 3451321 - Carg16136-RA Car20g00616 168475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car20g00616 219 Pfam C2H2-type zinc finger 70 93 - -
Car20g00616 219 Coils Coil 157 181 - -
Car20g00616 219 MobiDBLite consensus disorder prediction 155 204 - -
Car20g00616 219 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Car20g00616 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Car20g00616 219 MobiDBLite consensus disorder prediction 1 65 - -
Car20g00616 219 MobiDBLite consensus disorder prediction 167 182 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car19g00610 Car20g00616 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00134 Car-Chr6:833056 Car20g00616 Car-Chr20:3450662 1.27E-10 dispersed
Car16g01207 Car-Chr16:10176194 Car20g00616 Car-Chr20:3450662 1.94E-11 dispersed
Car20g00616 Car-Chr20:3450662 Car10g00207 Car-Chr10:1001194 7.57E-08 dispersed
Car19g00610 Car-Chr19:7584838 Car20g00616 Car-Chr20:3450662 1.39E-34 wgd
Car20g00616 Car-Chr20:3450662 Car03g00581 Car-Chr3:5520871 3.25E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5382 PF13912 zf-C2H2_6 4.50E-08 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car20g00616 - - cmax:111484009 361.303