Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0622 ATGGGAGTTTCTTCAGTGACGCTTAACGGCTTACACTTGATTGTCATGTTCCTCCTCCCTCCGCTGATTCCCTATTTTTGCACCCTCAACCAAAATCTAATCACGATCAAATCCACTTTAATCACACGGTCCATATTTCATTACAAGTGGGGGCCCCACGCTATAGGCTACCCTTTGTGGGCCCCCAAATCTTCCTCCTATAAAACCACTTCATCTTCTCCATTCCTCAACTCTCTCTTTCTCTCTCCCTCTCTCCTTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCATTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGCCATAGCCTCTGTCTCACCCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCAAATGGATACCTGAAGATGGCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCTAAGCTCGACAGGTGA 1338 51.64 MGVSSVTLNGLHLIVMFLLPPLIPYFCTLNQNLITIKSTLITRSIFHYKWGPHAIGYPLWAPKSSSYKTTSSSPFLNSLFLSPSLLLCVFFADSVEMHKSTTSASNTIAAATIMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6288207 6293398 + CcPI632755_01g006220.1 Cco01g0622 169484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0622 445 SUPERFAMILY CCCH zinc finger 354 389 IPR036855 GO:0046872(InterPro)
Cco01g0622 445 SMART c3hfinal6 357 384 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 SMART c3hfinal6 395 422 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 SUPERFAMILY CCCH zinc finger 391 425 IPR036855 GO:0046872(InterPro)
Cco01g0622 445 ProSiteProfiles Zinc finger C3H1-type profile. 395 423 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 PANTHER CCCH ZINC FINGER/TIS11-RELATED 162 423 IPR045877 GO:0003729(InterPro)
Cco01g0622 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 358 383 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 FunFam Zinc finger protein 36, C3H1 type-like 1 391 427 - -
Cco01g0622 445 ProSiteProfiles Zinc finger C3H1-type profile. 357 385 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 Gene3D - 351 390 - -
Cco01g0622 445 Gene3D - 391 427 - -
Cco01g0622 445 Coils Coil 196 216 - -
Cco01g0622 445 FunFam zinc finger CCCH domain-containing protein 15-like 351 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0622 Cco-Chr1:6288207 Cco11g0749 Cco-Chr11:8330780 2.00E-36 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58584 PF00642 zf-CCCH 7.30E-12 CL0537 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0622 K18753 - csv:101203274 627.091