Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0622 | ATGGGAGTTTCTTCAGTGACGCTTAACGGCTTACACTTGATTGTCATGTTCCTCCTCCCTCCGCTGATTCCCTATTTTTGCACCCTCAACCAAAATCTAATCACGATCAAATCCACTTTAATCACACGGTCCATATTTCATTACAAGTGGGGGCCCCACGCTATAGGCTACCCTTTGTGGGCCCCCAAATCTTCCTCCTATAAAACCACTTCATCTTCTCCATTCCTCAACTCTCTCTTTCTCTCTCCCTCTCTCCTTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCATTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGCCATAGCCTCTGTCTCACCCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCAAATGGATACCTGAAGATGGCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCTAAGCTCGACAGGTGA | 1338 | 51.64 | MGVSSVTLNGLHLIVMFLLPPLIPYFCTLNQNLITIKSTLITRSIFHYKWGPHAIGYPLWAPKSSSYKTTSSSPFLNSLFLSPSLLLCVFFADSVEMHKSTTSASNTIAAATIMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6288207 | 6293398 | + | CcPI632755_01g006220.1 | Cco01g0622 | 169484 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0622 | 445 | SUPERFAMILY | CCCH zinc finger | 354 | 389 | IPR036855 | GO:0046872(InterPro) | |
Cco01g0622 | 445 | SMART | c3hfinal6 | 357 | 384 | IPR000571 | GO:0046872(InterPro) | |
Cco01g0622 | 445 | SMART | c3hfinal6 | 395 | 422 | IPR000571 | GO:0046872(InterPro) | |
Cco01g0622 | 445 | SUPERFAMILY | CCCH zinc finger | 391 | 425 | IPR036855 | GO:0046872(InterPro) | |
Cco01g0622 | 445 | ProSiteProfiles | Zinc finger C3H1-type profile. | 395 | 423 | IPR000571 | GO:0046872(InterPro) | |
Cco01g0622 | 445 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 162 | 423 | IPR045877 | GO:0003729(InterPro) | |
Cco01g0622 | 445 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 358 | 383 | IPR000571 | GO:0046872(InterPro) | |
Cco01g0622 | 445 | FunFam | Zinc finger protein 36, C3H1 type-like 1 | 391 | 427 | - | - | |
Cco01g0622 | 445 | ProSiteProfiles | Zinc finger C3H1-type profile. | 357 | 385 | IPR000571 | GO:0046872(InterPro) | |
Cco01g0622 | 445 | Gene3D | - | 351 | 390 | - | - | |
Cco01g0622 | 445 | Gene3D | - | 391 | 427 | - | - | |
Cco01g0622 | 445 | Coils | Coil | 196 | 216 | - | - | |
Cco01g0622 | 445 | FunFam | zinc finger CCCH domain-containing protein 15-like | 351 | 390 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0622 | Cco-Chr1:6288207 | Cco11g0749 | Cco-Chr11:8330780 | 2.00E-36 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58584 | PF00642 | zf-CCCH | 7.30E-12 | CL0537 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0622 | K18753 | - | csv:101203274 | 627.091 |