Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0422 ATGGATACGGTTAAGAACTCCTTCAAAGGTAATGTATCTTTCAAGCATACCAGGAAGATTTCTGCTGGCGTAGCTGGTAGCGAAATTAATCACGAGGAGCTCCCCATTCTTCTCAATCGCGAACCTACGGGTCATCGTCGCCGTCTTAGGGATCGTCATCCGGTGAACGATTCTGATCCATCTGACCGAACAGAGGTCATTCTCAAGATCGACGATGGCGGTTCTTCGGCTGTTTCCAGACATCAGGACCCTGCCGGCAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTGCGATTTCTGGAACAATGATGCAATTGGAATTGGGGAAAGTTCGAGTAGGGTTAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGTACAGCCTGGTTATGGTATGGAGGATCCACCAACGAAGCTGATTGGTGAGTTTCTTCATAAGCAGAAAATTGGGGGAGAAACGACTTTGGATATGGATTTAGAAATGGAGGAGTTGAGGCCTGATAGGATTATACCTCCATTGGCAGAATCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCATTCCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGATGAGAAGGCGGTATAGAGATTCTCGCGATTTTCAGGAAGAGTATAAAGGAGGACAACCGCCATGGCAGCAATCGCATCATGAACGTCTTGGATCTCCGACTATCTCTGGGGTTCAGAATGAGTCTGTTGCTGAGGCTATGAGGTGCGCGTCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTCATTTGCTTAGGGCGAAAACCAAGTCAAGATTGATAGACCCGCCGGCAGAGCCAGACCGGCTCCCTGGCCTTATTCCTAAATCAGGACAACTACGATCTGGGTTTCTCGGCAAGATTGACGACGACGATGACGATCCCTTTCTGGAGGAGGACCTTCCAGACGAATTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTTTAATCACCGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTGGATATATGGAAATGGGAGGTAATGATTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATCGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCGCTTGGCATCTGTTGTTCAATAGGCGGGTTGAGAAACAAACCAACACTAGTATACTCAATTATGTGAGGAGAGTTTTAGTGTGTCTCTTGATAAGCACATTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAACCAATATGTCATTGAGACGCTCTCAGGGCCACCCCTTATTGAAATACGGAAGAATGAGGAAGAAGATGGGAGGATTGCAGATGAAGTCCAAATATTACAGAATGCTGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTGTAAAGAGTGGAAGGGTAATAGGTAGTGGACGGACTCACAAAAGTTTTTGTGCAAAAAGTACAAAATTTTCTCGAGCACTTACCAAAAATGGGAACGATGGAATAACGATTGACCACTTGCACAAACTAAGTCCGAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACCGGGGCCATATCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAGAAGATTTTTCAGAACGTGGCTCGGCGTGGATATAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGATGAGGTTTTCAAAACGATGAGTCTCTTTGAAGGAGCAACTGAAAACCGGAGGATAAGCAAATCTGCTTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTTCTAGGAATTGCCTCCAGCAAATTTTTCGTCTTCATTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAACGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATATGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCTACAACTTCTACCGTAGTCCTGAAATGGGCGAATCGGTTGAATTCTCTGTCCATATAGCTACTCCAGCTGAGAAAATTACAGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTTCCCCTATGATTGTGTTCAAGGATATCGATGGTTTAAACATGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCACCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCATCTTGGTCGAAGAAGTCGTTAAAATCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATGTCAATATCCGTTCACTGCCTTCTTCTGCACCCTTCATTGGCTTTCCATCTAATTGGACTTCCTCTGCAAGTTGA 2859 42.88 MDTVKNSFKGNVSFKHTRKISAGVAGSEINHEELPILLNREPTGHRRRLRDRHPVNDSDPSDRTEVILKIDDGGSSAVSRHQDPAGNNGGKVWRESRCDFWNNDAIGIGESSSRVSGVDRNEGFEFVQPGYGMEDPPTKLIGEFLHKQKIGGETTLDMDLEMEELRPDRIIPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSRDFQEEYKGGQPPWQQSHHERLGSPTISGVQNESVAEAMRCASNLSFHSELSFQRKSHLLRAKTKSRLIDPPAEPDRLPGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDEFKRGNFNALTVLQWVSLILITAALVCTLSIPYLREKSLWELDIWKWEVMILILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNRRVEKQTNTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIRKNEEEDGRIADEVQILQNAGINIPPDLKAATFASVKSGRVIGSGRTHKSFCAKSTKFSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPYLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMREDEVFKTMSLFEGATENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFVFISSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGTQMIVEEMNILTTVFLRYDNLKIIIPNSVLATKLIYNFYRSPEMGESVEFSVHIATPAEKITAMKQRIISYIEGNKEHWCPSPMIVFKDIDGLNMLKLAVWLSHRMNHQDSGERWARRSILVEEVVKICQELDIQYRLLPIDVNIRSLPSSAPFIGFPSNWTSSAS 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3805530 3809468 + CcPI632755_02g004220.1 Cco02g0422 171179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0422 952 MobiDBLite consensus disorder prediction 173 233 - -
Cco02g0422 952 PIRSF Memb_At2g17000 52 952 IPR016688 -
Cco02g0422 952 SUPERFAMILY Sm-like ribonucleoproteins 765 824 IPR010920 -
Cco02g0422 952 Gene3D - 775 824 IPR023408 -
Cco02g0422 952 MobiDBLite consensus disorder prediction 200 217 - -
Cco02g0422 952 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 50 947 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cco02g0422 952 MobiDBLite consensus disorder prediction 176 199 - -
Cco02g0422 952 FunFam Predicted mechanosensitive ion channel 775 824 - -
Cco02g0422 952 Pfam Mechanosensitive ion channel, beta-domain 768 824 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0422 Cco-Chr2:3805530 Cco02g1208 Cco-Chr2:22474843 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0422 K22048 - csv:101207426 1665.2