Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0135 ATGTTCATCCTTCGACTGAGTGTCTTGGAGAATCTAAAGGGCAGTCGTCGAAATTCTTGGGCTCGTGGGTTAGACCGTACGATTGGTTTGTTCAAAAATTCTTTAGGAAAAGTAAAGAAATCGGTTACTTGTTTTAATCAACGTAAGTGTTTGACCTCAACTTGGAAATTCCGGAATTGGATCTACGGAATACTTAGGGTTTTCGATTTTCCTGATTTTTTCCATTCGCTGCTCGATCTTCCTTCCTCCAGTCGGTTGAATTCCGAGGGCTCTTTTCGCATTCAGAGCCCATCGGCAGAAGAAGACTGGCTTCTTGCAATCCCCTGTGGTAGTGTTCCTGAAGATAAATCTAAGAAGGATAATCCAGAGGATCAGCAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGGTTCTTGAATCATATAAACCAAACATTGTTTACTTACAAGGGGAACAACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATTTGTCCACCGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCGTTGTCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACCTTTTCTTGTTATGAAGCATGCCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCAAATGCTTCATTTAGGATGTATTGCTTGGGAAACAACCTTGTTTTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGATCGGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATCGAACCCCTTGAGAAAGAGGCAGCTGACGATGAAGAAAGTTCATCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTGTCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTGTAGACAGAGGCGAACTAGTGCAGACACTAATCGATGGTGAAGGAACCAAACGCTTATCTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTAGGACTGGGCATTGCCAGCATCCAGGGTTTTTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTCTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCCATAGCACACTCCCAAGCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCGAAATATATGAAAGATACAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGGAGAATAGATAGTGTGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTCCCATTCCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCTCTTTTCATGGAATAGAGACAGGTGGGCACAATGGAAGCCTGGTTAAAGCTAGTGCTCCTTCTAGTAATCCCACAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTTCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATCATTCCCATGAATCCATTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGATGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAAACGACTTATTCCTCCAGGTGGGCTTGCCGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTTTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTCGGAAATACACTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCCGGGGACTGGGTGAACTGTGGCATTTGTGGGGAGTGGGCACACTTCGGCTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTGGCAAATGGGTTGTCTCCAGGCTTCTCCTCAAGACCAATATGA 2610 42.68 MFILRLSVLENLKGSRRNSWARGLDRTIGLFKNSLGKVKKSVTCFNQRKCLTSTWKFRNWIYGILRVFDFPDFFHSLLDLPSSSRLNSEGSFRIQSPSAEEDWLLAIPCGSVPEDKSKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRVLESYKPNIVYLQGEQLENDEVGSLVWGDVDLSTVEAISGLFSYPLSTTVYLEIAKGDEVADALHSKGIPYVIYWRSTFSCYEACHFRNAFLSVLQSSSAHTWDAFQLANASFRMYCLGNNLVFPNSSHEEVSEDRGPHLLGERLKINIEPLEKEAADDEESSSEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIVDRGELVQTLIDGEGTKRLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGFSVASFEKDDAERLLFFCSRKEKDLFLSNLTHSTLPSWLKPPAPRKRSKYMKDTSLGSHDVIEHLKVSSGRRIDSVNMEIGSRNGFSTPMFPFPRRRGMKIAAMRPIPHVNRHKMISFHGIETGGHNGSLVKASAPSSNPTKHVTVGSASVFQQKMFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEDEFLKDLLQFLALRGHKRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1196140 1202137 - CcPI632755_09g001350.1 Cco09g0135 186592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0135 869 Pfam ARID/BRIGHT DNA binding domain 689 785 IPR001606 GO:0003677(InterPro)
Cco09g0135 869 SUPERFAMILY FYVE/PHD zinc finger 781 849 IPR011011 -
Cco09g0135 869 SMART bright_3 686 790 IPR001606 GO:0003677(InterPro)
Cco09g0135 869 Gene3D - 682 785 IPR036431 GO:0003677(InterPro)
Cco09g0135 869 ProSiteProfiles ARID domain profile. 685 789 IPR001606 GO:0003677(InterPro)
Cco09g0135 869 SMART ARID_2 682 785 - -
Cco09g0135 869 MobiDBLite consensus disorder prediction 113 132 - -
Cco09g0135 869 CDD ARID 688 785 - -
Cco09g0135 869 CDD PHD_ARID4_like 795 846 - -
Cco09g0135 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 855 IPR013083 -
Cco09g0135 869 SUPERFAMILY ARID-like 688 800 IPR036431 GO:0003677(InterPro)
Cco09g0135 869 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 96 861 IPR042293 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1514 Cco-Chr7:29168939 Cco09g0135 Cco-Chr9:1196140 6.10E-291 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59884 PF01388 ARID 3.90E-15 CL0123 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0135 - - - 0.0