Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g0816 ATGGCTGTGACAGCTTTGCTGTACCTTTTGCTTTTTTGGTTCTTTGAATCTCTACCTTATTACTGGGAGTTATTTCATCTGTTCAGGAATTGTGGAAAGATTTTCTTGCTGACTGGTGGAGAAGAATCAAGGAAGAGGGCTTTCCGGTACCACTTTAGCAAAGTTCGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATATCTGATTCTTCTCCATGCCCAAGTGCAGCGACGATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCTGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACCGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAAGGCGGTGAGTCTCCTCAAACACCAGATAATGATACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGATGAGGAGGAGGACTCGGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTGGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTTGCATGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 1671 45.18 MAVTALLYLLLFWFFESLPYYWELFHLFRNCGKIFLLTGGEESRKRAFRYHFSKVRWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEDEEEDSEEDASPQGIGNVDVNVLVEEEQCETRTAEEDVRKDSCMVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10014987 10019907 + CePI673135_06g008160.1 Cec06g0816 205553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g0816 556 SUPERFAMILY ARID-like 108 214 IPR036431 GO:0003677(InterPro)
Cec06g0816 556 FunFam High mobility group B protein 15 105 217 - -
Cec06g0816 556 SMART ARID_2 108 198 - -
Cec06g0816 556 SMART hmgende2 343 412 IPR009071 -
Cec06g0816 556 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 89 460 - -
Cec06g0816 556 MobiDBLite consensus disorder prediction 324 338 - -
Cec06g0816 556 Coils Coil 469 489 - -
Cec06g0816 556 Coils Coil 393 413 - -
Cec06g0816 556 ProSiteProfiles ARID domain profile. 111 202 IPR001606 GO:0003677(InterPro)
Cec06g0816 556 MobiDBLite consensus disorder prediction 444 502 - -
Cec06g0816 556 CDD HMG-box_AtHMGB9-like 344 410 - -
Cec06g0816 556 SMART bright_3 112 203 IPR001606 GO:0003677(InterPro)
Cec06g0816 556 CDD ARID_HMGB9-like 113 198 IPR045303 GO:0003677(InterPro)
Cec06g0816 556 Pfam ARID/BRIGHT DNA binding domain 114 198 IPR001606 GO:0003677(InterPro)
Cec06g0816 556 Gene3D High mobility group box domain 328 423 IPR036910 -
Cec06g0816 556 MobiDBLite consensus disorder prediction 315 351 - -
Cec06g0816 556 MobiDBLite consensus disorder prediction 470 490 - -
Cec06g0816 556 Gene3D - 105 205 IPR036431 GO:0003677(InterPro)
Cec06g0816 556 Pfam HMG (high mobility group) box 344 411 IPR009071 -
Cec06g0816 556 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 344 411 IPR009071 -
Cec06g0816 556 SUPERFAMILY HMG-box 337 416 IPR036910 -
Cec06g0816 556 FunFam High mobility group B protein 15 326 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1699 Cec-Chr5:28275914 Cec06g0816 Cec-Chr6:10014987 3.80E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29769 PF01388 ARID 2.40E-17 CL0123 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g0816 - - - 0.0