Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1486 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTTACTCTCACCGTCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGATTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCATTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATTCTAACATATATACCAACAATACTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAAAAAAATTACCTCCGAAGGAATTCCTCACATGA 1224 42.16 MSNAVEDLILRHRHSDFRFQLLRSYSHRRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNSNIYTNNTSPFQEFHGMQRILPLHNNIDDDYWFQSNSQKKLPPKEFLT 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26572878 26576990 + CePI673135_08g014860.1 Cec08g1486 210128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1486 407 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec08g1486 407 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Cec08g1486 407 MobiDBLite consensus disorder prediction 55 69 - -
Cec08g1486 407 MobiDBLite consensus disorder prediction 99 123 - -
Cec08g1486 407 PANTHER TRANSCRIPTION FACTOR E2F 102 361 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cec08g1486 407 FunFam E2F transcription factor 1 149 222 - -
Cec08g1486 407 Gene3D - 150 222 IPR036388 -
Cec08g1486 407 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Cec08g1486 407 MobiDBLite consensus disorder prediction 49 70 - -
Cec08g1486 407 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Cec08g1486 407 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Cec08g1486 407 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec08g1486 407 MobiDBLite consensus disorder prediction 99 154 - -
Cec08g1486 407 Gene3D - 227 337 - -
Cec08g1486 407 Coils Coil 247 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2351 Cec-Chr2:40745891 Cec08g1486 Cec-Chr8:26572878 1.40E-58 dispersed
Cec06g1865 Cec-Chr6:31998011 Cec08g1486 Cec-Chr8:26572878 7.30E-08 dispersed
Cec04g1183 Cec-Chr4:31425840 Cec08g1486 Cec-Chr8:26572878 2.50E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30098 PF16421 E2F_CC-MB 4.30E-26 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1486 K06620 - csv:101211469 659.833