Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g0867 ATGGAGTTGGAGGATCACGAAGAAGAAGACATGGAAATAGTAGAACCACCATCAAATTACATCAACAAAATCCACCCACTTTCTTGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCATATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCTTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGGTGGAGATGGCGGCGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTTGTAGTAAGGAATCCAAACAAAACTAA 591 52.96 MELEDHEEEDMEIVEPPSNYINKIHPLSWHTKNPSPVHSNPIIYNYKECLKNHAVAVGGHAFDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAAKMEWRIQKKDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFCSKESKQN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18775665 18776255 + CePI673135_10g008670.1 Cec10g0867 213782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g0867 196 SUPERFAMILY Homeodomain-like 123 187 IPR009057 -
Cec10g0867 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec10g0867 196 FunFam Zinc-finger homeodomain protein 2 119 190 - -
Cec10g0867 196 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Cec10g0867 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cec10g0867 196 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Cec10g0867 196 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Cec10g0867 196 Gene3D - 121 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1547 Cec-Chr8:27126900 Cec10g0867 Cec-Chr10:18775665 1.20E-37 dispersed
Cec10g0867 Cec-Chr10:18775665 Cec11g0010 Cec-Chr11:170889 8.60E-37 dispersed
Cec10g0867 Cec-Chr10:18775665 Cec04g1544 Cec-Chr4:34928549 1.70E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30363 PF04770 ZF-HD_dimer 1.20E-27 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g0867 - - - 0.0