Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2065 CGTCTCCTTTCTCCTATCTTCACCATCGTCCGATTCCATTCCACCACTCCATTTCCACCCGATCTAAATCCTTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTTCTCCCACCAGGGTTTTGGTGAAGGATGGCCGATACTCCGGCGAGTCCCGGCGGAGGAAGTCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACTGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAACCCCAGCATCTGATGGTCCCTATGCAAGGTCTTGAAGATCTTGAAAAAGACTTGGTAGCAGTAGCAACCTTTGGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCCGCCGGGGGAGTTGCGTTCCGCCGTAGACGGAGAAGTTTTATCCCTCACAAACTCTCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGAGGGTTAA 840 46.31 RLLSPIFTIVRFHSTTPFPPDLNPSLSRPNYKSSVFSHQGFGEGWPILRRVPAEEVMRAASRVRGLMIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQPQHLMVPMQGLEDLEKDLVAVATFGSGVLSLCFFIIVDVKRALQFRSPIKASAGGVAFRRRRRSFIPHKLSYFFIVLLEFRESSVCSAKEG 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35366968 35377496 - CePI673135_10g020650.1 Cec10g2065 214980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2065 279 Gene3D Histone, subunit A 66 190 IPR009072 GO:0046982(InterPro)
Cec10g2065 279 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Cec10g2065 279 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Cec10g2065 279 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Cec10g2065 279 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 68 123 IPR003958 -
Cec10g2065 279 ProSitePatterns NF-YB/HAP3 subunit signature. 90 106 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2065 279 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 68 187 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cec10g2065 279 SUPERFAMILY Histone-fold 68 154 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0423 Cec-Chr10:5109684 Cec10g2065 Cec-Chr10:35366968 9.40E-35 dispersed
Cec10g0441 Cec-Chr10:5277628 Cec10g2065 Cec-Chr10:35366968 7.20E-26 dispersed
Cec10g2065 Cec-Chr10:35366968 Cec02g1461 Cec-Chr2:32002614 2.70E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30457 PF00808 CBFD_NFYB_HMF 1.10E-21 CL0012 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2065 K08065 - csv:101212699 253.447