Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec10g2065 | CGTCTCCTTTCTCCTATCTTCACCATCGTCCGATTCCATTCCACCACTCCATTTCCACCCGATCTAAATCCTTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTTCTCCCACCAGGGTTTTGGTGAAGGATGGCCGATACTCCGGCGAGTCCCGGCGGAGGAAGTCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACTGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAACCCCAGCATCTGATGGTCCCTATGCAAGGTCTTGAAGATCTTGAAAAAGACTTGGTAGCAGTAGCAACCTTTGGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCCGCCGGGGGAGTTGCGTTCCGCCGTAGACGGAGAAGTTTTATCCCTCACAAACTCTCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGAGGGTTAA | 840 | 46.31 | RLLSPIFTIVRFHSTTPFPPDLNPSLSRPNYKSSVFSHQGFGEGWPILRRVPAEEVMRAASRVRGLMIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQPQHLMVPMQGLEDLEKDLVAVATFGSGVLSLCFFIIVDVKRALQFRSPIKASAGGVAFRRRRRSFIPHKLSYFFIVLLEFRESSVCSAKEG | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35366968 | 35377496 | - | CePI673135_10g020650.1 | Cec10g2065 | 214980 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec10g2065 | 279 | Gene3D | Histone, subunit A | 66 | 190 | IPR009072 | GO:0046982(InterPro) | |
Cec10g2065 | 279 | PRINTS | CCAAT-binding transcription factor subunit A signature | 125 | 143 | - | - | |
Cec10g2065 | 279 | PRINTS | CCAAT-binding transcription factor subunit A signature | 106 | 124 | - | - | |
Cec10g2065 | 279 | PRINTS | CCAAT-binding transcription factor subunit A signature | 87 | 105 | - | - | |
Cec10g2065 | 279 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 68 | 123 | IPR003958 | - | |
Cec10g2065 | 279 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 90 | 106 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec10g2065 | 279 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 68 | 187 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Cec10g2065 | 279 | SUPERFAMILY | Histone-fold | 68 | 154 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec10g0423 | Cec-Chr10:5109684 | Cec10g2065 | Cec-Chr10:35366968 | 9.40E-35 | dispersed | |
Cec10g0441 | Cec-Chr10:5277628 | Cec10g2065 | Cec-Chr10:35366968 | 7.20E-26 | dispersed | |
Cec10g2065 | Cec-Chr10:35366968 | Cec02g1461 | Cec-Chr2:32002614 | 2.70E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30457 | PF00808 | CBFD_NFYB_HMF | 1.10E-21 | CL0012 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec10g2065 | K08065 | - | csv:101212699 | 253.447 |