Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g00386 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATGGGTGGTACTCCATTTATGATGCAAAATGGGAGTGAAGTTTCTCTTCCTCCTTACATGTATAGATTTTGTTTATGTTGTTGCTTCTGCTTAGAGGTGTCACGAAACTTTGTCAGAATTCAAAATTATACAATACTAAATGAGTCGGACATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAATGTTACTAAAGTTCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGGATCTGTTTTGAATCCTATCCAAATAGTAGGATCGAGTCATCTGCCTGTGGTCATCCTTTCTGTGTATTCTGCTGGGAAGGCTACGTGAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGCGCTGTGGTTGATCAAGACATGATTAATTCATTGGCCTCCAGTGAAGACAGGAAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACCAAATGGTGCCCAGCGCCTGGTTGTGAGAATGCTGTTCTTTTTGACGCTTGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATAGCTTCTGCTGGAAAGTTGGTATCACTAATCATAAAGTTGTTTTAGCTTTTATTATTTTACATATGCATTTAGCTTTTCTTTTGAATCTTCAGTGCACAGAAGAAGCCCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAGAACATGAATTGGATATTAGCTAATTCGAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGCATGCACATGACTTGCACTCCTCCGTGCAAATTTGAATTTTGCTGGCTATGTCATGGTGCATGGTCTGATCATGGTGAAAGAACTGGGGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGCGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGCTACAGATAATTGAATGTAGACGTGTTTTAAAATGGACTTATGCATATGGTTTTTACCTGCCGGAACTGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAGTGTGCGGAAAAAGAGCTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTATTTTGAGAACCTTGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACAAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAATGGACGTGGTAAGGGAGTGAGTCGAACTGCTAGCTCAACCAGAAGTGGCGATAATGCCACTCACTGGTCATGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACTACATGTGAGATGTGCCATCAACGCCATTGA 1878 42.28 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGGTPFMMQNGSEVSLPPYMYRFCLCCCFCLEVSRNFVRIQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWNVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIESSACGHPFCVFCWEGYVSTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCENAVLFDACNGNYDVSCFCTYSFCWKVGITNHKVVLAFIILHMHLAFLLNLQCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCHGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPELEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRNGRGKGVSRTASSTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5373605 5380846 + Chy3G053660.1 Chy03g00386 222547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g00386 625 MobiDBLite consensus disorder prediction 557 599 - -
Chy03g00386 625 Coils Coil 391 411 - -
Chy03g00386 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 231 IPR013083 -
Chy03g00386 625 ProSiteProfiles Zinc finger RING-type profile. 148 194 IPR001841 -
Chy03g00386 625 ProSiteProfiles Zinc finger RanBP2 type profile. 594 625 IPR001876 -
Chy03g00386 625 Pfam IBR domain, a half RING-finger domain 217 274 IPR002867 -
Chy03g00386 625 Pfam IBR domain, a half RING-finger domain 322 370 IPR002867 -
Chy03g00386 625 ProSiteProfiles TRIAD supradomain profile. 144 383 IPR044066 -
Chy03g00386 625 ProSitePatterns Zinc finger RanBP2-type signature. 602 621 IPR001876 -
Chy03g00386 625 SUPERFAMILY Ran binding protein zinc finger-like 598 623 IPR036443 -
Chy03g00386 625 MobiDBLite consensus disorder prediction 585 599 - -
Chy03g00386 625 SUPERFAMILY RING/U-box 145 226 - -
Chy03g00386 625 Pfam Ariadne domain 392 553 IPR045840 -
Chy03g00386 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 293 572 IPR031127 GO:0004842|GO:0016567
Chy03g00386 625 SMART ibrneu5 217 276 IPR002867 -
Chy03g00386 625 SMART ibrneu5 309 379 IPR002867 -
Chy03g00386 625 Gene3D - 301 556 - -
Chy03g00386 625 SUPERFAMILY RING/U-box 218 273 - -
Chy03g00386 625 SMART zf_4 600 624 IPR001876 -
Chy03g00386 625 CDD RING-HC_RBR_TRIAD1_like 148 198 - -
Chy03g00386 625 SUPERFAMILY RING/U-box 324 372 - -
Chy03g00386 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 277 IPR031127 GO:0004842|GO:0016567
Chy03g00386 625 Gene3D - 595 625 - -
Chy03g00386 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 293 572 - -
Chy03g00386 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 69 277 - -
Chy03g00386 625 MobiDBLite consensus disorder prediction 557 577 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00386 Chy-Chr3:5373605 Chy05g00713 Chy-Chr5:9450648 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g00386 K11968 - csv:101223037 1117.45