Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01278 ATGGCTTTTCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCATTCCTCCTCCTTCTCAAGCTCTTACTCCTGCTATTACCAACCAGTCTCAGTTCTTCAATCTTCTACAAAAGACTGCCTCAGGAGAGTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCCTTCTGCAACTTCACAGGAATTCGGTGCAATGACCAAGGACATATCATTGAGATTGATATCTCTGGCCAGTCTCTCTCTGGGAGCTTTCCGGAAGATGTATGCTCTTACCTGCCAAAGCTGAGAGTTCTTCGTCTTGCTGGTACCGGTTTTCACGGACGTTTTCCTTCAGGAATTACCAACTGCTCTCTTATTGAAGAACTTAACATGAGCTCTTTATATCTCAATGGAACTATCCCGGATTTATCACAAATGAAACAGCTGCGTGTACTCGACCTCTCATACAATTCCTTTACTGGTGATTTTCCCATGTCGGTTTTCAACCTTGTTAATCTTGAGGAGCTGAATTTCAATGAAAATTACAAACTCAACTTATGGAAGTTGCCTGACAAGATATCCAGTCTGACAAAGCTAAAATCTATGGTCTTGACAACCTGTATGTTAGATGGCAAAATCCCACGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTGTTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACGGGAAACATACCAGAGGAGCTTGGAAATTTAACAGAGCTGGTGGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAACTCCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAATGTGCTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCTCAAAAGTTAGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCAGAAAATCGCCTGTCTGGGCCATTGCCATTGGATATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTTCTAAATAGCCTTTCTGGAGAAATACCATCAAGCTATGCTGAATGTGTTTCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGACGGGAACAATACCTGAAGGAGTTTTGGGTCTTCCCCATGTTTCAATTATTGATGTTGCTCAAAATAAGCTCACTGGTTCCATTTCAAATTCTATCTCGCAAGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCGGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGATCTTAGCAACAATCTTCTCTCCGGTCCAGTGCCATCACAGATTGGCAATCTGATGAAACTAAATCAGGTAATGTTACAAGGAAACCAACTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAGTCTCTCAACGTTCTTGATCTCTCGAACAATCGTTTAACCGGGAAAATTCCAGAAAGTTTGAGTGAATTGTTTCCAAGTTCTTTCAATTTTTCGAACAATCAACTTTCAGGTCCAATTCCTTTGTCTTTGATTAAACAAGGGTTAGCAGATAGCTTTTTCGGCAACCCAAATCTATGTGTTCCACCAGCGTATTTCATTTCACCAGATCAAAAATTCCCCATTTGTTCAAATTTTTCCTTTAGAAAACGTCTAAATTTCATCTGGGAATATGCATATTTATCAAAGGCAACAACCAAGTGCGATGTGTACAGCTTTGGAGTAGTGTTAATGGAGTTGATAACAGGGAAGAAGCCGATTGAAACCGAGTATGGAGAAAACAAGAACATTGTGTTCTGGGTTTCGAACAAAGTGGATACAAAAGAAGGGGTTCTTGAAATTCTTGACAATAAATTAAAAGGGTTGTTTAAGGATGACATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGCGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTCGAAGATGTTGAAAAAGGGGAAGATACGTATATGATGTCACTAAAATAA 2160 40.42 MAFHSAFFLLLFFTTFSIPPPSQALTPAITNQSQFFNLLQKTASGEFLSDWDLSGGKSFCNFTGIRCNDQGHIIEIDISGQSLSGSFPEDVCSYLPKLRVLRLAGTGFHGRFPSGITNCSLIEELNMSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFNLVNLEELNFNENYKLNLWKLPDKISSLTKLKSMVLTTCMLDGKIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEELGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPNVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLLNSLSGEIPSSYAECVSLLRFRISFNQLTGTIPEGVLGLPHVSIIDVAQNKLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLMKLNQVMLQGNQLDSSIPTSFTSLKSLNVLDLSNNRLTGKIPESLSELFPSSFNFSNNQLSGPIPLSLIKQGLADSFFGNPNLCVPPAYFISPDQKFPICSNFSFRKRLNFIWEYAYLSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDNKLKGLFKDDIIKALRIAIRCTYKNPVLRPAMREVVQLLQEVDPCKFDRPFEDVEKGEDTYMMSLK* 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15810150 15813065 - Chy3G062580.1 Chy03g01278 223439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01278 719 Gene3D Transferase(Phosphotransferase) domain 1 573 700 - -
Chy03g01278 719 Gene3D Ribonuclease Inhibitor 280 572 IPR032675 -
Chy03g01278 719 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Chy03g01278 719 ProSiteProfiles Leucine-rich repeat profile. 506 528 IPR001611 GO:0005515
Chy03g01278 719 SUPERFAMILY L domain-like 257 576 - -
Chy03g01278 719 Gene3D Ribonuclease Inhibitor 33 180 IPR032675 -
Chy03g01278 719 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 594 702 - -
Chy03g01278 719 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 13 593 - -
Chy03g01278 719 PRINTS Leucine-rich repeat signature 459 472 - -
Chy03g01278 719 PRINTS Leucine-rich repeat signature 504 517 - -
Chy03g01278 719 SMART LRR_typ_2 504 528 IPR003591 -
Chy03g01278 719 SMART LRR_typ_2 166 192 IPR003591 -
Chy03g01278 719 SMART LRR_typ_2 288 311 IPR003591 -
Chy03g01278 719 SMART LRR_typ_2 433 456 IPR003591 -
Chy03g01278 719 SMART LRR_typ_2 240 264 IPR003591 -
Chy03g01278 719 SUPERFAMILY Protein kinase-like (PK-like) 594 695 IPR011009 -
Chy03g01278 719 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 594 702 - -
Chy03g01278 719 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 593 - -
Chy03g01278 719 Pfam Leucine Rich Repeat 507 528 IPR001611 GO:0005515
Chy03g01278 719 SUPERFAMILY RNI-like 72 352 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01278 Chy04g00175 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01278 Chy-Chr3:15810150 Chy04g00176 Chy-Chr4:1553221 1.27E-16 dispersed
Chy02g00797 Chy-Chr2:4989498 Chy03g01278 Chy-Chr3:15810150 2.81E-20 wgd
Chy03g01278 Chy-Chr3:15810150 Chy04g00175 Chy-Chr4:1542431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71143 PF00560 LRR_1 0.097 CL0022 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01278 - - csv:101220145 1118.99