Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00175 ATGGCTCTCTGTTTCTACTTCTTCCTTCTTCACTTTCTGGTTTCTCTTGCCTTTGGGACTGATCAATCTCTGTTTTTCTCTTTGATGCAAAAGGGCGTTGTTGGGAATTCTCTGCCTTCCGATTGGACTGGAAATTCTTTCTGTAATTTCACCGGTATTACTTGTAATGAAAAGGGGTTGGTGGTGGGGATTGATCTTTCAGGCAGGGCGGTTTCTGGGAGGTTTCCGGCTGATGTTTGTTCTTATTTACCGGAGTTGAGAGTGCTGCGGCTTGGACGGAGTGGGTTACGTGGAACGTTTCCACGTGGGGTAACGAACTGCTCCGTTTTGGAAGAATTGGATATGAGTTCTCTGTCTCTGATGGGGACGTTACCGGATTTCTCGTCGTTGAAAACCTTGAGGATACTCGACCTGTCGTACAATAACTTCACCGGTGAGTTTCCATTGTCAGTTTTCAGTTTGACAAATCTCGAGAGTTTGAATTTCAACGAGGACAACAATTTCAAAACGTGGCAGTTGCCGGAGAATGTGTCTGGGTTGACGAAGTTGAAATCGATGGTGTTAACGACTTGTATGTTGGAGGGAAGAATTCCGGCGACGATTGGGAATATGACGGCACTTGTTGACCTTGAACTAAGTGGGAATTTCCTCACCGGAAAAATCCCAAAGGAAATCGGGAATTTGAAGAATTTGAGAGCGTTGGAGCTTTATTACAATTCATTAGTCGGTGAAATTCCAGAAGAACTTGGGAACTTAACAGAGCTCGTGGACTTGGACATGTCAGTCAACAAGTTGACCGGAAAATTACCAGAATCCATTTGTCGTCTTCCGAAACTTGAAGTTCTTCAGCTTTACAACAATTCATTAACAGGAGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCACTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCACCTATGGTGGTTCTCGACTTATCGGAGAATTATTTCTCGGGTCCATTACCGACAGATGTCTGTGGAGAAGGTAAACTAATGTATTTCCTTGTATTGGAGAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTACATGTCAATCCCTTTTACGGTTTCGTGTCAGTTCGAATAATTTAGAAGGTCCGGTGCCGGTGGGACTTTTGGGTCTTCCTCATGTTTCGATTATTGATTTTGGTAACAATAATTTAAGCGGTGAAATTCCCAATTCTTTTGTTAAAGCCAGGAATCTTTCTGAATTGTTTATGCAGAGTAATAAAATTTCCGGCGTGTTACCGCCGGAGATTTCAAAAGCTACCAATTTAGTTAAGATCGATCTTAGCAACAATCTCTTATCTGGTCCAATTCCTTCAGAAATTGGTAATCTCAGAAAGCTTAATCTGTTGCTTTTACAAGGAAATCATTTGAATTCTTCAATACCCACTTCACTTTCCGATCTTAAATCTTTGAATGTTCTTGATTTGTCTGACAATCGATTAACCGGCAACATCCCGGAAAGTCTCTGTGAATTGTTACCAAATTCAATAAATTTCTCAAACAATCAACTCTCCGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTGGAAAGCTTTTCCGGCAACCCAGGATTATGCGTTTCAGTTTACTTGGATGCATCCGATCAGAAATTCCCAATTTGTTCTCAAAACAACAACAAAAAACGATTGAACTCCATTTGGGCAATTGGAATATCGGCTTTTATAATCTTGATCGGAGCTGCTCTGTATTTACGACGACGTTTGAGCAGAGAAAAATCCGTAATGGAACAAGACGAAACATTATCATCTTCATTCTTCTCATACGATGTGAAAAGCTTCCACCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGATAAGAACATCGTGGGGCATGGTGGCTCCGGTACGGTGTACAAAATTGAACTAAGCAGTGGAGAAATGGTAGCCGTTAAAAGACTATGGAGTCGAAAGGGGAAAGATACGTCTTCGGATCAAGAACAGTTGTATTTGGATAAAGAATTGAAAACAGAAGTTGAAACATTGGGAAGTATAAGGCACAAAAACATAGTGAAATTATATTGCTATTTCTCAAGTTTGGATTGCAGTCTTTTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTACATAAGGGTTGGATTCATTTGGATTGGCCAACTAGACATCAAATTGCTTTAGGCATAGCTCAAGGATTGGCTTATCTTCATCATGATTTGTTACCTTCTATCATTCACAGAGACATTAAAACAACTAATATTCTGTTGGATGTTAATTATCATCCTAAGGTTGCAGATTTTGGCATTGCTAAGGTTTTGCAAGCTAGAACTGGCAAGGATTCTACCACCACCGTCATCGCTGGCACTTATGGCTATCTAGCTCCCGGTATACATCTCTTCTCTTTAATGAACTACTCATAA 2496 40.46 MALCFYFFLLHFLVSLAFGTDQSLFFSLMQKGVVGNSLPSDWTGNSFCNFTGITCNEKGLVVGIDLSGRAVSGRFPADVCSYLPELRVLRLGRSGLRGTFPRGVTNCSVLEELDMSSLSLMGTLPDFSSLKTLRILDLSYNNFTGEFPLSVFSLTNLESLNFNEDNNFKTWQLPENVSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPKEIGNLKNLRALELYYNSLVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGEGKLMYFLVLENKFSGQIPPSYGTCQSLLRFRVSSNNLEGPVPVGLLGLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQSNKISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLNLLLLQGNHLNSSIPTSLSDLKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDASDQKFPICSQNNNKKRLNSIWAIGISAFIILIGAALYLRRRLSREKSVMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEMVAVKRLWSRKGKDTSSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPGIHLFSLMNYS* 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1542431 1544926 - Chy4G068930.1 Chy04g00175 224074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00175 831 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Chy04g00175 831 PRINTS Leucine-rich repeat signature 447 460 - -
Chy04g00175 831 PRINTS Leucine-rich repeat signature 492 505 - -
Chy04g00175 831 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 14 821 - -
Chy04g00175 831 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 14 821 - -
Chy04g00175 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Chy04g00175 831 SUPERFAMILY L domain-like 245 569 - -
Chy04g00175 831 SUPERFAMILY RNI-like 63 342 - -
Chy04g00175 831 Gene3D Ribonuclease Inhibitor 22 167 IPR032675 -
Chy04g00175 831 Gene3D Transferase(Phosphotransferase) domain 1 726 830 - -
Chy04g00175 831 Pfam Protein kinase domain 642 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00175 831 SUPERFAMILY Protein kinase-like (PK-like) 627 826 IPR011009 -
Chy04g00175 831 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
Chy04g00175 831 Gene3D Ribonuclease Inhibitor 229 300 IPR032675 -
Chy04g00175 831 Gene3D Ribonuclease Inhibitor 168 228 IPR032675 -
Chy04g00175 831 SMART serkin_6 640 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00175 831 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Chy04g00175 831 SMART LRR_typ_2 83 107 IPR003591 -
Chy04g00175 831 SMART LRR_typ_2 492 516 IPR003591 -
Chy04g00175 831 SMART LRR_typ_2 228 252 IPR003591 -
Chy04g00175 831 SMART LRR_typ_2 130 154 IPR003591 -
Chy04g00175 831 SMART LRR_typ_2 276 300 IPR003591 -
Chy04g00175 831 ProSiteProfiles Protein kinase domain profile. 640 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00175 831 Gene3D Ribonuclease Inhibitor 301 562 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01278 Chy04g00175 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00175 Chy-Chr4:1542431 Chy06g01584 Chy-Chr6:17955989 1.24E-168 dispersed
Chy04g00175 Chy-Chr4:1542431 Chy04g00176 Chy-Chr4:1553221 0 tandem
Chy12g00389 Chy-Chr12:4585830 Chy04g00175 Chy-Chr4:1542431 2.05E-64 transposed
Chy03g01278 Chy-Chr3:15810150 Chy04g00175 Chy-Chr4:1542431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71163 PF00069 Pkinase 3.60E-34 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00175 - - csv:101222864 1578.53