Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01305 ATGGATCCATGTCCTCCCGAACCACCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGATACTAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCCACCGAGTGCCTACCACCTTTGGTGAGACTAGTTCTTAATTCCTCCTATAAAATCTTTGCTCTCTCCCTCTTTCTCCAAGCTTTCAACTCCTTAATCTCTGTTCTGAATTTTTTTCAGGACATGACTCTGGCTACCCCAACTCAGGATTTGGTAGCCAAGGATCTTCATGGATATGAGTGGAGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCCAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGATATCAATCAAATACATAACTTTAAGGCACGTGAACAGAGAGAGAGTACACCATGCAGTGATATGTGGAAAACCGAAGGGCTCAGCCCCACTGAAAAATAAAACTAATGGGCCTAGTCTTGCACAAATATGCCATATGAAGCTACGGGGTTTAGATTCATTGGCTGCTCAACATACTCAAAATGCCTCAAGTGTTCTTAAGTTCCTAGCCTGCATGTTTACTGCAAATTACCTTAAAGATTCTCCCAGACCTCTATGCACGAGCAAACAATTCTGCTGTAGAATATTCAACGAGTATTGCTCATTAGCAGTGATATGTAAGAGCCCTCAGTCAGCTGTCCTCAAGTGTGGAAGAGAGTCGTATAAAACTTATAGACGATGGAACATTCAAATGTTGCAAACGGGAGACAATGGAGAGTTGCGTGTTGGGGTAAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACTACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGCCTCAATAAATACTTGGAAGCTGTCAACAACAAGTTTTCTATTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTACAATGGGATGAACAAACATCTATTCTAAGACCTGACAGAGTATCACCTTGGGATATAGACCCACTCACGTCTTCAGCAGTCACAGGCCTATCTCAACCCATTTCAAAAAATAAAAGGCCTCGACAACCAACTCCAGCTCATGATGGTGCTGATTTGACTAAGTCAACACATTGGGATTCTGGATTGGCACAGTCACATGATGGTAAACAATGCAGTAATGCGGCTGAAGGCAGAAAAGGTGAAAATAATGAATCGTGTCACCATAGAGAGACAGATACTATCAGCAACAGCTCATGTGTATCAAGAACACAGACTGATACCTGGCTATCTCCTACTCAATCGCATAGTTATAAACACCCAGTAAATGACATGGCGCAGGATTCCAAAACTGTCCCTAGCAGTGGTTGGACCTTTCTATTAGGAACTCCAACCTCTCACTTGGTTAAGTTAAGTGATGATCAAATACTTGATCCCATTGAAAATGGGAAGAAAGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTGCTGAGAAAGCATCTTCTCAACCAAGCAGTGGGTCTAGCGACCCAGATGGGCGCATCAGTACCTTATCCGTGGCTCAGTCCGATCCAAAATCTGACAACTTAGAAGTCTCTATAGAAAGAAAATCAGAACCATCACAAGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCAGCTAACACTAGAAGCCGCACCAAGGTTCTCATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATATTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACCGACGATGAAGGGGATATGATGCTTGTTGGAGATGATCCATGGGAAGAATTCCGCAACATGGTGAGGAGAATTTTTATATGCTCTAAGGAGCAAGTGAAAAATATGAGCTCAGGAAGCAAGCAGCTGACATCAATAGAAGTTGAAGGAGATGTAGTAACCCCAGTCTCCCCTGCAGTTTGA 2235 43.36 MDPCPPEPPRPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLVRLVLNSSYKIFALSLFLQAFNSLISVLNFFQDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRISIKYITLRHVNRERVHHAVICGKPKGSAPLKNKTNGPSLAQICHMKLRGLDSLAAQHTQNASSVLKFLACMFTANYLKDSPRPLCTSKQFCCRIFNEYCSLAVICKSPQSAVLKCGRESYKTYRRWNIQMLQTGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSIGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSILRPDRVSPWDIDPLTSSAVTGLSQPISKNKRPRQPTPAHDGADLTKSTHWDSGLAQSHDGKQCSNAAEGRKGENNESCHHRETDTISNSSCVSRTQTDTWLSPTQSHSYKHPVNDMAQDSKTVPSSGWTFLLGTPTSHLVKLSDDQILDPIENGKKGETVASCRLFGIDLNHLAAEKASSQPSSGSSDPDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEIQCNQSSSANTRSRTKVLMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFRNMVRRIFICSKEQVKNMSSGSKQLTSIEVEGDVVTPVSPAV* 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15000111 15004635 - Chy9G170210.1 Chy09g01305 234202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01305 744 MobiDBLite consensus disorder prediction 610 633 - -
Chy09g01305 744 ProSiteProfiles B3 DNA-binding domain profile. 54 150 IPR003340 GO:0003677
Chy09g01305 744 SUPERFAMILY CAD & PB1 domains 628 709 - -
Chy09g01305 744 Gene3D - 628 721 - -
Chy09g01305 744 SMART B3_2 16 150 IPR003340 GO:0003677
Chy09g01305 744 MobiDBLite consensus disorder prediction 573 602 - -
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 9 1 45 - -
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 9 270 731 - -
Chy09g01305 744 ProSiteProfiles PB1 domain profile. 633 714 IPR000270 GO:0005515
Chy09g01305 744 CDD B3_DNA 14 137 IPR003340 GO:0003677
Chy09g01305 744 Pfam Auxin response factor 308 386 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy09g01305 744 Gene3D - 343 416 - -
Chy09g01305 744 Gene3D - 13 149 IPR015300 -
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 78 137 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 270 731 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy09g01305 744 Pfam B3 DNA binding domain 16 137 IPR003340 GO:0003677
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 45 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy09g01305 744 MobiDBLite consensus disorder prediction 573 633 - -
Chy09g01305 744 MobiDBLite consensus disorder prediction 413 427 - -
Chy09g01305 744 Pfam AUX/IAA family 623 669 IPR033389 -
Chy09g01305 744 Pfam AUX/IAA family 679 711 IPR033389 -
Chy09g01305 744 SUPERFAMILY DNA-binding pseudobarrel domain 13 142 IPR015300 -
Chy09g01305 744 MobiDBLite consensus disorder prediction 413 489 - -
Chy09g01305 744 MobiDBLite consensus disorder prediction 445 467 - -
Chy09g01305 744 PANTHER AUXIN RESPONSE FACTOR 9 78 137 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy07g01133 Chy09g01305 CCT
Chy07g01133 Chy09g01305 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01133 Chy-Chr7:16265895 Chy09g01305 Chy-Chr9:15000111 1.44E-46 dispersed
Chy09g01305 Chy-Chr9:15000111 Chy02g02705 Chy-Chr2:29881835 3.71E-28 dispersed
Chy09g01305 Chy-Chr9:15000111 Chy11g01328 Chy-Chr11:19476458 4.73E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18521 PF02362 B3 3.00E-16 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01305 K14486 - csv:101209208 924.465