Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00205 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTGTGGTTCTGGGGTTGGTTTTTTCGCCAATTAATGGCGACCCAGTTGAAGACAAGCGAGCTCTGCTTGATTTTGTCAAGAATCTCCCTCACTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCGGTTTGTCATTACTGGACTGGTATAACTTGCAGTCAAGATGAATCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTTCACGGCCCGATTCCAGCGAATACTCTTAGCCGGCTATCGGCACTGCAAATATTGAGTCTCAGATCCAATCGTATAACGGGGGATTTCCCTTTGGATTTCTCGAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCACCTTTGTGAATCTCTCTAATAATGGCTTCAATGGCCGTATTCCACATTCGCTTTCTAATCTGACAGCACTCACAGGTTTGAATCTGGCAAACAACTCTCTTTCAGGAGAAATACCTGACCTCCAAATCCCCAGATTGCAGGTTTTGGATTTGTCTAACAACAATCTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAAGTCTGTATTTGTAGGCAATGACATATATTTTGGAAGTTCTTTATTAAACAATCCTCCCGTACCCGCGCCATTGCCTGTGTCGAATGAAAAGCCAAAGAATGCTGGTGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTCTCAAGAAGGAAGAGGGAAGATGAATATTCTGGGGATCTTCAGAAAGGTGGAATGTCGCCTGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGTCATTATGCATTTGACTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGTTGAAGGATGTAAGCGCTGGGAAACGCGATTTTGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGTTGAATTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTGGTCAGGGAAGCGTCTCGGCCATGTTACACGGTAAACGCGGAGAGGAAAAAACTCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCCGTGTCCATGCCGAAAATGGTGGGAAACTCGTCCATGGAAATGTGAAATCCTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACTATAACAAGCTCACTCTCTCCACCTATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGGAAGGCGACACAAGCTTCAGATGTTTTCAGCTTCGGTGTCGTGCTCCTCGAGCTTCTAACCGGAAAGTCTCCAATTCATGCAACAGGCGGCGAAGAGATTGTTCATTTGGTTAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGATATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTAGCCAGGATACCTGACCAGAGACCCAAAATGGCGGAAATTGTGAAGATGATCGAAAGTGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGAACCGATCTGAAAGTTTGATGCCGCCGCAAGCTGTTGAGACAGAAAATTCAACCCCTCAGCAAAACAACAAACACGCAGGAGGATCTCAAGAGTTTCAACTCTTTTGGATTTTGGTGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGTTTCTTCTCTTTCTCTTTCTCCTTCTCATCAACTATTTCCTGCCTGATTTCGACTGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCTTATGCAGGAGGAGTGTTTCTTGTCAACATTCACTTCCCTCCAGATTATCCGTTTAAACCACCCAAGGTTGCATTCAGAACAAAAGTCTTTCATCCCAATATCAACAGCAACGGTAGCATATGCCTCGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCACTGCTAACGGACCCGAATCCTGATGATCCTTTGGTGCCAGAGATTGCACACATGTATAAGACTGACAGAAGCAAGTACGAGGCAACCGCCAGAAGCTGGACCCAGAAGTATGCTATGGGTTAG 2448 45.22 MEALWIFSFVVVLGLVFSPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSQDESRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPLDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPHSLSNLTALTGLNLANNSLSGEIPDLQIPRLQVLDLSNNNLSGSVPKSLQRFPKSVFVGNDIYFGSSLLNNPPVPAPLPVSNEKPKNAGGLGEAALLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEIVKMIESVRPMEAENRPSSTNRSESLMPPQAVETENSTPQQNNKHAGGSQEFQLFWILVMASKRILKELKDLQKDPPTSCSAGFFSFSFSFSSTISCLISTGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2033852 2047038 - ClCG01G002090.2 Cla01g00205 263794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00205 815 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515
Cla01g00205 815 MobiDBLite consensus disorder prediction 599 636 - -
Cla01g00205 815 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Cla01g00205 815 SUPERFAMILY UBC-like 644 814 IPR016135 -
Cla01g00205 815 CDD UBCc 651 809 IPR000608 -
Cla01g00205 815 Gene3D Ribonuclease Inhibitor 25 226 IPR032675 -
Cla01g00205 815 Gene3D Ubiquitin Conjugating Enzyme 646 815 IPR016135 -
Cla01g00205 815 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672|GO:0006468
Cla01g00205 815 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 741 756 IPR023313 -
Cla01g00205 815 SUPERFAMILY L domain-like 37 208 - -
Cla01g00205 815 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Cla01g00205 815 PANTHER PROTEIN, PUTATIVE-RELATED 21 608 - -
Cla01g00205 815 Gene3D Transferase(Phosphotransferase) domain 1 402 619 - -
Cla01g00205 815 PANTHER OS05G0588300 PROTEIN 21 608 - -
Cla01g00205 815 MobiDBLite consensus disorder prediction 602 636 - -
Cla01g00205 815 Pfam Ubiquitin-conjugating enzyme 654 808 IPR000608 -
Cla01g00205 815 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cla01g00205 815 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cla01g00205 815 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Cla01g00205 815 SMART ubc_7 652 814 - -
Cla01g00205 815 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00205 815 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 649 814 IPR000608 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00205 Cla05g00940 CCT
Cla01g00205 Cla05g00940 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00067 Cla-Chr1:554407 Cla01g00205 Cla-Chr1:2033852 0 dispersed
Cla01g00205 Cla-Chr1:2033852 Cla06g01042 Cla-Chr6:22563430 0 dispersed
Cla05g00940 Cla-Chr5:9316029 Cla01g00205 Cla-Chr1:2033852 6.08E-95 dispersed
Cla11g00245 Cla-Chr11:2868483 Cla01g00205 Cla-Chr1:2033852 0 dispersed
Cla02g00779 Cla-Chr2:9865930 Cla01g00205 Cla-Chr1:2033852 4.98E-21 transposed
Cla02g01856 Cla-Chr2:33705634 Cla01g00205 Cla-Chr1:2033852 0 transposed
Cla04g00636 Cla-Chr4:20744678 Cla01g00205 Cla-Chr1:2033852 4.73E-13 transposed
Cla06g01771 Cla-Chr6:31179575 Cla01g00205 Cla-Chr1:2033852 1.28E-35 transposed
Cla01g00064 Cla-Chr1:542564 Cla01g00205 Cla-Chr1:2033852 3.28E-98 wgd
Cla01g00205 Cla-Chr1:2033852 Cla05g00939 Cla-Chr5:9311942 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80228 PF07714 PK_Tyr_Ser-Thr 2.40E-34 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00205 - - csv:101211836 1098.19