Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01429 ATGGAGGCTGCTGCTGCTCCTTTCGGCTGTCCCCGGCCGGTCGTCAAGACCGAGAAGCCCGCTGGTGATGGCGACAACAATCAAGATTCTCCCTCTAAACAACATCTTCTCGTTAAGAGAGGGAACTATGCAAAACAAGAGCATGAAGCTGAAGATAAAAGCAACTCATCTGATCAAAAAGATTTAAGCTGCACAAACCTTCAGGAAAAGCAACTGGAATCCGCTCGAGCAGAAATGGGAGAAGTGAGAGAAGAAAACCAAAGACTTAAAAAGAGTTTAAACCAAATCATGAAGGATTACGAAGCCCTAAAAATGCAATTCCTAGGGATTGTCGGACAAGAATCGAAGAAATTTCCAAATCAAGACGACATGTCGAACAAGGAACAACAACACGACCAAATCGAGCTGGTTTCACTGACGCTGGGGAGATTTCCGGTGGCGGAGAAGAAAAAAACGGCCGATGAAAAGAACTCTGTGAATATTATTATTGGTGGCAACGACGAAGAAGCTGCCGTTAAAGAGGCATTATCTCTTGGTTTGAATTGCAAATTCAAACATGAAGAATCAATTATGACGGTTGCCGTTAAAGATGTCGATTCTCCGAAAAGTTTTGATCATGAGATGAGGGAGGAAGCTGGAGAGACGAATTGGTCGTCGACTAAAGGGGCGAAGACGATTAGAAGTGTTGAAGATGATGTTACGCCGCAAAATCCACCCAAACGTGCTAGGGTTTGCGTTAGAGCCCGATGCGAAACCGCTACGATGAACGATGGTTGCCAATGGAGGAAATACGGGCAAAAGATAGCAAAAGGAAACCCATGTCCACGAGCATATTATCGTTGCACAGGCTCACCAACATGTCTCGTTCGAAAACAAGTCCAAAGATGTGCTGACGACATGTCAATCTTAATCACCACCTATGAAGGCAATCACAACCACCCATTACCCGCCTCCGCCAACGCCATGGCCTCCACCACCTCGGCCGCTGCCTCCATGCTCCTCTCTGGCTCCTCCACCTCCACCGCGGCCTCCTCCTCGTCCACTAATACAAATAATCTCCAGGGCTTAAACTTTTACACAAATAATTCCAAACCAAATTTTTACTTACCTAATAATTCTTCAATCATTTCATCCACTTCCCCAACTCACCCCACAATCACTTTGGACCTCACTTCAAATCCTTCTTCCTCTTCCTCAAATTGCTCGACCCATTTTGGTAAATTCACATCTAGTTTTCCTAATTCTCGTTATCCTTTTACTAGCCAACTTGATTTCGGATCTTCTAGAAACAATGTGTTGTCGTGGAATAACGGCCTTCTTAGTTACAACAGAAATAACCACCAAACTACTACTACAACTACCAATAATATCTATCAAAATTACATCCAACAACGAAACCCCGCTACGTCACTGCCACATCAGCAACCGCCTTTACCCGACACCATTGCAGCCGCTACGAAGGCCATCACGGCAGATCCGAGCTTCCAATCTGCTCTTGCCGCTGCTCTTACGTCGATCATCAGCACCGGGGGTGCTAGTGCTGGCCCCACCAAGTCAACGTCGGCGAGAGGTGAACAATCCTTGTTTCAGTTGATGGCGGCGACGACAACAAATAAAGGAAATGGATGTGGGACGAGCTTTTTGAACAATATTACGACATCGACGACGACGAGTAATTCACCACCGACGGGGAATATGGTGTTTGTTCCGGCGAGTTCGTTGCCGTTTTCGAGTTCGAAGAGTGCATCGGCTTCTCCAGGTGATCATATTGATCTTACCAATTAA 1785 45.99 MEAAAAPFGCPRPVVKTEKPAGDGDNNQDSPSKQHLLVKRGNYAKQEHEAEDKSNSSDQKDLSCTNLQEKQLESARAEMGEVREENQRLKKSLNQIMKDYEALKMQFLGIVGQESKKFPNQDDMSNKEQQHDQIELVSLTLGRFPVAEKKKTADEKNSVNIIIGGNDEEAAVKEALSLGLNCKFKHEESIMTVAVKDVDSPKSFDHEMREEAGETNWSSTKGAKTIRSVEDDVTPQNPPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCLVRKQVQRCADDMSILITTYEGNHNHPLPASANAMASTTSAAASMLLSGSSTSTAASSSSTNTNNLQGLNFYTNNSKPNFYLPNNSSIISSTSPTHPTITLDLTSNPSSSSSNCSTHFGKFTSSFPNSRYPFTSQLDFGSSRNNVLSWNNGLLSYNRNNHQTTTTTTNNIYQNYIQQRNPATSLPHQQPPLPDTIAAATKAITADPSFQSALAAALTSIISTGGASAGPTKSTSARGEQSLFQLMAATTTNKGNGCGTSFLNNITTSTTTSNSPPTGNMVFVPASSLPFSSSKSASASPGDHIDLTN 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28775137 28779704 + ClCG01G014450.1 Cla01g01429 265018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01429 594 Gene3D WRKY domain 240 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 Coils Coil 65 106 - -
Cla01g01429 594 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 MobiDBLite consensus disorder prediction 40 58 - -
Cla01g01429 594 MobiDBLite consensus disorder prediction 1 86 - -
Cla01g01429 594 Pfam WRKY DNA -binding domain 256 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 45 589 IPR044810 GO:0003700
Cla01g01429 594 SUPERFAMILY WRKY DNA-binding domain 248 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g01429 594 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 45 589 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01429 Cla06g01605 CCT
Cla01g01429 Cla06g01605 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01429 Cla-Chr1:28775137 Cla02g00199 Cla-Chr2:2110886 3.83E-57 dispersed
Cla05g01057 Cla-Chr5:10905271 Cla01g01429 Cla-Chr1:28775137 1.93E-53 transposed
Cla01g01429 Cla-Chr1:28775137 Cla06g01605 Cla-Chr6:29568866 4.72E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60423 PF03106 WRKY 2.50E-23 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01429 - - cmo:103482921 779.245