Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla01g01882 | ATGTCCATATCACCCCAAGCAAAGGAAGAATCTAAAAGTGCGGTTCCTTGTGAAGAAGTTCAACAAAGAACGCGCTCTTCTCGTGAAGTTAGCTTGGTGGAAGCGAGAGAGAATGAGAAGAAGTTCCACGGCGGAGCTGAATTGCCGGAACTGAAGAATCGGAAGCTGCTGCAGAGCGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAAATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGACGGGAATCCATCTTCTTACCTTCTGCCATTCCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGGGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGATATTTATTTCAAGAACTTAAGTGCCTGCTCTTTAAAGTTCCTTTCCCTTGGAGCCCTTGCAAAAATCTGA | 1161 | 48.49 | MSISPQAKEESKSAVPCEEVQQRTRSSREVSLVEARENEKKFHGGAELPELKNRKLLQSDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEDIYFKNLSACSLKFLSLGALAKI | 386 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 33622507 | 33625320 | + | ClCG01G019290.2 | Cla01g01882 | 265471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla01g01882 | 386 | MobiDBLite | consensus disorder prediction | 222 | 246 | - | - | |
| Cla01g01882 | 386 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Cla01g01882 | 386 | MobiDBLite | consensus disorder prediction | 77 | 91 | - | - | |
| Cla01g01882 | 386 | MobiDBLite | consensus disorder prediction | 62 | 91 | - | - | |
| Cla01g01882 | 386 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 68 | 371 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 | |
| Cla01g01882 | 386 | MobiDBLite | consensus disorder prediction | 222 | 238 | - | - | |
| Cla01g01882 | 386 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 73 | 196 | IPR008540 | - | |
| Cla01g01882 | 386 | MobiDBLite | consensus disorder prediction | 12 | 47 | - | - | |
| Cla01g01882 | 386 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 1 | 68 | 371 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01882 | Cla-Chr1:33622507 | Cla03g00693 | Cla-Chr3:8378055 | 1.22E-39 | dispersed | |
| Cla01g01882 | Cla-Chr1:33622507 | Cla08g01510 | Cla-Chr8:27895970 | 2.31E-80 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60478 | PF05687 | BES1_N | 2.60E-64 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla01g01882 | K14503 | - | csv:101216171 | 533.487 |