Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01088 ATGGAGCTCCGCTTATGTCCACCGCCATACGTGATCGGAGACGGCGTTCGACTCTTCTTAAAGCCGCTTAAACGCCACGACGGCTTCCGCAGTTACCCTTTCGTGCCAAATCTGCAGGTCAAATGTACACTCACCAAACAAACCCACCGATTCCTCTCCACATTGGCCACAACCGCCGCCACCGGTGACCATTCGGCGACCAATCGCTTGATTCGAAAGTTTGTAGCGAGTTCTCCGAAATCGATAACTCTCAATGTTCTCTCCAATATCGTCTCCCCCCACACGGCTCAACCTGGGCTCTGCTCTGTTGCTCTCACGTTGTATTCTAGAATTACGGAAGCGTCTTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTATTGCCTTCCTCGACCAAAATGGACTGTACAGTGAGTCGGAAGCCCTAATGTCCGAGACAATTTCAAAGTTAGGGTTTCAAGAAAGAAAACTTGTGAATTTCTACTCCCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATGTGGTAACTCCTATGCTCGCCTTCTTGAGCTTCTTTATAATTCGCCGTCAGTTTATGTTAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGACCTCAGGAAGCTGAGACTTTGGTAGAAAAAATGAGGAGCAAAGGAATTACGCCTTCTGCATATGAATATAGGTCCATTATTTACGCCTATGGAACATTGGGATTGTTTGAAGATATGCAGAGGAGTTTAAAACAGATGGAGAATGAAGATTATGCATTAGACACAATTTGTTCCAATATGGTGCTTTCTTCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAAGAATGAAAACTTCCGCGCATCTTAATTTCTCTGTTCGGACTTACAATTCTGTTTTGAAGTCATGTCCGAAGATTACATCAATGCTACAAGATCACAAGAGCAGCAAGTTTCCCGTTTTGATCGAAGGCTTAATCGCGGTTCTGGATGGTGATGAGGAGGCTTTGTTGGTTGAAGAGTTGGTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAATTGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATGTTACAGTGGATGAAGGAGATGAGACTCAACTTTGAGGATGAGAGTTGTGTGATTCCAGCACAAGTTACATTGATTTCTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTTTGATTAAAGAGATTATAGTTCGAACTGAAAGTCCGCTGAGAGTGGATCGAAAGAACACAGGTTGCTTCATCTCTAAAGGAAAAGCTGTAAAGAATTGGTTATGTTCACTACCAGAAAAAAGGGAGATTGTAGCTAATAGAAAATGCCATAATAGGCCTTTTACACCGTCTTAA 1461 43.05 MELRLCPPPYVIGDGVRLFLKPLKRHDGFRSYPFVPNLQVKCTLTKQTHRFLSTLATTAATGDHSATNRLIRKFVASSPKSITLNVLSNIVSPHTAQPGLCSVALTLYSRITEASWFTWNSKLVADLIAFLDQNGLYSESEALMSETISKLGFQERKLVNFYSQLVESQSKHGSERGCGNSYARLLELLYNSPSVYVKRRAYESMVTGLCSMKRPQEAETLVEKMRSKGITPSAYEYRSIIYAYGTLGLFEDMQRSLKQMENEDYALDTICSNMVLSSYGAHNKLADMVLWLQRMKTSAHLNFSVRTYNSVLKSCPKITSMLQDHKSSKFPVLIEGLIAVLDGDEEALLVEELVVGSSVLKEVMVWDAMELKLDLHGAHVGAAYVIMLQWMKEMRLNFEDESCVIPAQVTLISGSGNHSIVRGESPVKALIKEIIVRTESPLRVDRKNTGCFISKGKAVKNWLCSLPEKREIVANRKCHNRPFTPS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23085066 23086792 - ClCG02G011140.1 Cla02g01088 267214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01088 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Cla02g01088 486 ProSiteProfiles Smr domain profile. 373 457 IPR002625 -
Cla02g01088 486 Gene3D - 372 455 IPR036063 -
Cla02g01088 486 SMART SMR_2 370 457 IPR002625 -
Cla02g01088 486 SUPERFAMILY SMR domain-like 371 453 IPR036063 -
Cla02g01088 486 Gene3D Tetratricopeptide repeat domain 93 330 IPR011990 GO:0005515
Cla02g01088 486 PANTHER ATPASE EXPRESSION PROTEIN 3 37 465 - -
Cla02g01088 486 PANTHER OS02G0120000 PROTEIN 37 465 - -
Cla02g01088 486 TIGRFAM PPR: pentatricopeptide repeat domain 201 233 IPR002885 -
Cla02g01088 486 Pfam PPR repeat 201 230 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00428 Cla02g01088 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01088 Cla-Chr2:23085066 Cla01g02514 Cla-Chr1:38828941 6.95E-09 dispersed
Cla02g01088 Cla-Chr2:23085066 Cla02g01383 Cla-Chr2:28248026 1.96E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01088 - - bhj:120089515 860.136