Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01168 ATGGAAGACGGGGAGCTTGAATCCTCGAACCCTGAAGTGTTTTCGAGTTCGAATGCTGTTGAGCTTCCGAGCAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGACGACACAGCGGAGTCTGTGGACAAAAAGAACAAGAAGCGGCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGGGAGATTGGAACGTTTCCATATCGGAAACCAGCCAATTCAGATCTGCCCAATCAAAATGTGCCGGGTAGTTACATGGTGAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCACCCAGGGGACGATGGAAAAAGTGGAGAGAGCGTTTCGTTGAATGGGCAAAGTTTTAGTGCGTGTGACTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACGGGAGTAAAGGAACTTCCTGACTGTGGACTAGGAAACACAATTTCTAACGTTAATTGCTCAGAATTAAATCCGAAGAAAGCTCGAGGACTTGCCTCTTTTTGTCTTCAGCTACTAACAACTCTTTATATGATGCTCACGGTTCAATTAGGAGGAGGGCCTGCCACGTCCGTTCCTGTTCTGTTCAATGCAGCACCAACATTGACTTTCAGGTTTTCTCTTCCGCAACCCATTCACCTGCTTTCTAGGTTGTTTGGGATGGTTTCTGAGGATATTGTTGGCGGTTTTAGCAAACTTTCCCTCTTTCTAAGCCAAGAAATTTCATGGATTATTGGAATTACAGAACTAGGAAATGGTGGGATTTCATCTAAGAAGAAAGGTGTCGACCAAGTGGGGTTCACCATTGTTGGTGACAAAATGCTTGTGGCTGTACTTTTGAGTTCTCTGATGAAGTATGTCCACTAG 1164 44.59 MEDGELESSNPEVFSSSNAVELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYRKPANSDLPNQNVPGSYMVNPCNVQCNDQAYCLHPGDDGKSGESVSLNGQSFSACDFENLQCLANQNTGVKELPDCGLGNTISNVNCSELNPKKARGLASFCLQLLTTLYMMLTVQLGGGPATSVPVLFNAAPTLTFRFSLPQPIHLLSRLFGMVSEDIVGGFSKLSLFLSQEISWIIGITELGNGGISSKKKGVDQVGFTIVGDKMLVAVLLSSLMKYVH 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25125949 25128876 + ClCG02G011920.1 Cla02g01168 267294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01168 387 Coils Coil 98 132 - -
Cla02g01168 387 SMART brlzneu 84 152 IPR004827 GO:0003700|GO:0006355
Cla02g01168 387 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Cla02g01168 387 MobiDBLite consensus disorder prediction 77 97 - -
Cla02g01168 387 PANTHER BASIC LEUCINE ZIPPER 23 1 240 - -
Cla02g01168 387 Gene3D - 75 153 - -
Cla02g01168 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cla02g01168 387 MobiDBLite consensus disorder prediction 72 97 - -
Cla02g01168 387 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 240 - -
Cla02g01168 387 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Cla02g01168 387 CDD bZIP 91 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01168 Cla-Chr2:25125949 Cla07g00826 Cla-Chr7:22932504 2.68E-06 dispersed
Cla02g00428 Cla-Chr2:4199100 Cla02g01168 Cla-Chr2:25125949 3.13E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60647 PF07716 bZIP_2 1.90E-14 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01168 K25785 - csv:101219501 503.056