Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00681 ATGTTTACAGGACTTGTGTATCAATCAATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCCAGAACCAGGTTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTCTCAATGAAGAAGCACGAGATGCTTACAGTCTGGGAGAAGTCAACAGTTACGATCTCTTCACATTTGCTGGTGATAGTTGTGGGTCATTTAATGAGGAAGAGCTCTTAGAAGGGATATCAGTGGTAAAAGATTTCTTTGATGGATTCCAAAGGCCAGAAGGGAGGACTTCTAAGCAACGTCTTCTAGTTGTAGCAAACAGGTTACCTGTGTCTGCTGTTAGGAAAGGGAAGGAGGCATGGCATCTCGAAATCAGCGTGGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTCGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGCAGGACAGAGAGCCTTAGAGAAGGCATTAGCTGAAAAGAAATGCATACCAGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGATCGGCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAATACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCGTCTCGTTCAGAGCTGTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCCTGCACCCGTATTCTTGGATTAGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTGACTCGCATAGCTGCTTTTCCAATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAATTACAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGACAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAATATCAAAAGCTAACAAGTCAGGTTCATGAGATTGTTGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTGGATCGTTCCCTTGACTTCCATGCATTATGTGCTTTATATGCGGTCACTGATGTGGCACTAGTTACATCTTTGAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCCGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATACCACCTTTTCTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGCTCACACAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACAGAAGCAGTTGATCCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGATGATAATTTCGGCAATTACAACATGTGGTTGGCAGCAGAAAATGGGATGTTCTTACGTCCGACAAAGGGCGAATGGATGACGACAATGCCTGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACTGAAAGAACTCCTAGATCCCATTTTGAGCTTCGTGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCACCTATGGACTGGTCCAATCTCAAATGCATCGGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGGGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTCGAACCCGACCTTCCTTCTGAAGTGCCACCTGCAGCAAGAACAACAGTCGCCAATCCATTCGGAGGAGTACCGGTGCCAAAGCTCTCAAACAATGGAGCCCCACCAAGCAGGTCGGCACGCCTCAAGAAACAGCGCTCCCTTTCCATTTTAGAAAGACGAGGAAATAGCCATGGGAGTGCAGTGTTTTGGAGGCCTATAGTGCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACGATTACTTCTCCTGTGCTGTGGGGCGGAAACGATCCAGTGCTAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAATTGTCAGAATGTTCAGAGTCAAGTTTAAGTTAG 2829 43.2 MFTGLVYQSMLSNNHNNSPPTPRTRLERLLRERELRRSNRSSLNEEARDAYSLGEVNSYDLFTFAGDSCGSFNEEELLEGISVVKDFFDGFQRPEGRTSKQRLLVVANRLPVSAVRKGKEAWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPFLPIREAVNCYSRSHNRLVILGFNATLTEAVDPLGRRYGQIRDMDLKVHPDVREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGNYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPAARTTVANPFGGVPVPKLSNNGAPPSRSARLKKQRSLSILERRGNSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDDYFSCAVGRKRSSARYLLGSSDDVVTLVKELSECSESSLS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8237610 8245164 - ClCG03G007280.1 Cla03g00681 269181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00681 942 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 102 567 IPR012766 GO:0003825|GO:0005992
Cla03g00681 942 Gene3D Glycogen Phosphorylase B; 349 551 - -
Cla03g00681 942 Pfam Glycosyltransferase family 20 102 567 IPR001830 GO:0003824|GO:0005992
Cla03g00681 942 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 933 - -
Cla03g00681 942 Gene3D Glycogen Phosphorylase B; 94 348 - -
Cla03g00681 942 SUPERFAMILY HAD-like 601 931 IPR036412 -
Cla03g00681 942 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 933 IPR001830 GO:0003824|GO:0005992
Cla03g00681 942 Gene3D - 626 815 IPR023214 -
Cla03g00681 942 Gene3D - 692 772 - -
Cla03g00681 942 Pfam Trehalose-phosphatase 626 822 IPR003337 GO:0003824|GO:0005992
Cla03g00681 942 CDD HAD_TPP 600 820 - -
Cla03g00681 942 Coils Coil 26 46 - -
Cla03g00681 942 CDD GT20_TPS 102 567 IPR001830 GO:0003824|GO:0005992
Cla03g00681 942 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 570 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00681 Cla-Chr3:8237610 Cla10g00141 Cla-Chr10:1490923 1.24E-145 dispersed
Cla11g01682 Cla-Chr11:30400639 Cla03g00681 Cla-Chr3:8237610 0 transposed
Cla03g00681 Cla-Chr3:8237610 Cla07g00244 Cla-Chr7:2689452 2.23E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00681 K16055 - csv:101213690 1755.34