Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01021 ATGCGTGGCGCCTCTCGAGCTCCGAACCGGTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCCTTCGCTCCTCCGGGTCATTATTACCACTTCGGCGGCGGTTCCTCCAATGCTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGTGAGAAAATTTATATGAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATCTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATACTGGAAAGGTTTCAATCAACAAATTCCAGGAAATGTGGATAGCGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTGACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACCTTGGAAGTTCCTGATCCTGATGAAGCTGTAGATTATCCACAGAGAAGATACCGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTTCCGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATCGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCCAATGAGTTTCCTGTTGGAATGATGAAGATTATTCCTTCAGATGTCGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACCGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCTCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATGTTAACTTAAGACAGAGATGA 1611 42.77 MRGASRAPNRSEPLPQSQTAQILPPLKRHLAFDSAKPPFAPPGHYYHFGGGSSNAIDQQPDSIVVKPLKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSEKIYMKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPVGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPSDVNLRQR 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25311946 25319774 - ClCG04G010370.1 Cla04g01021 271249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01021 536 MobiDBLite consensus disorder prediction 83 138 - -
Cla04g01021 536 MobiDBLite consensus disorder prediction 510 536 - -
Cla04g01021 536 SUPERFAMILY Winged helix DNA-binding domain 209 272 IPR036390 -
Cla04g01021 536 Pfam E2F transcription factor CC-MB domain 290 390 IPR032198 GO:0046983
Cla04g01021 536 MobiDBLite consensus disorder prediction 150 200 - -
Cla04g01021 536 PANTHER TRANSCRIPTION FACTOR E2FB 24 129 - -
Cla04g01021 536 Coils Coil 301 321 - -
Cla04g01021 536 Gene3D - 281 391 - -
Cla04g01021 536 PANTHER TRANSCRIPTION FACTOR E2FB 131 524 - -
Cla04g01021 536 SMART E2F_TDP_2 209 274 IPR003316 GO:0005667|GO:0006355
Cla04g01021 536 MobiDBLite consensus disorder prediction 1 53 - -
Cla04g01021 536 Gene3D - 203 277 IPR036388 -
Cla04g01021 536 MobiDBLite consensus disorder prediction 83 130 - -
Cla04g01021 536 PANTHER TRANSCRIPTION FACTOR E2F 131 524 IPR015633 GO:0000978|GO:0006357
Cla04g01021 536 Pfam E2F/DP family winged-helix DNA-binding domain 211 274 IPR003316 GO:0005667|GO:0006355
Cla04g01021 536 CDD E2F_DD 290 391 IPR032198 GO:0046983
Cla04g01021 536 PANTHER TRANSCRIPTION FACTOR E2F 24 129 IPR015633 GO:0000978|GO:0006357
Cla04g01021 536 SUPERFAMILY E2F-DP heterodimerization region 288 391 IPR037241 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01021 Cla-Chr4:25311946 Cla06g01632 Cla-Chr6:29848864 3.38E-11 dispersed
Cla08g01431 Cla-Chr8:27149914 Cla04g01021 Cla-Chr4:25311946 5.84E-77 transposed
Cla02g02172 Cla-Chr2:36787330 Cla04g01021 Cla-Chr4:25311946 4.84E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60928 PF16421 E2F_CC-MB 5.90E-33 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01021 K06620 - csv:101212480 760.755