Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01079 ATGAGTCTAATCTTTTTCATTAGGCTTCGTTTGCACAAAAACAAGCATTCTCATGCTTCTTCCTCCATTCTCCTTCAAAACAATAATTCTCGTGATCGTCTAATGAAGGAACTTGAGAAAGGAGAAAATTACATGGCTGTTCCTCTCTTCTCTTATCAAGAACTTGTACAAGCTACAAACAAATTCAACCCAGCCAACCAACTTGGAGATGGCGGCTTTGGCACTGTCTACTCCGGCAAACTACTAGATGGGCGTGAGGTTGCAGTTAAACGATTGTTTGAAAATAACTACAGAAAAGTTGAGCATTTCCTAAATGAAGTCGAGATCCTTACTCGTTTGCACCACCCACATCTTGTCACCCTTTACGGATGCACCTCTCGACGATCTCGTGAACTCTTGTTGGTTTATGAGTTTGTACCGAACGGTACGGTCGCCGATCATCTTCACGGCATCCAAGCAAGACCAGGTGAGCTTCCATGGGTTACAAGGTTGAAGATTGCCATAGAGACAGCAAGTTCTCTGGCTTTTCTCCATGCTTCGAAAACCATCCACCGTGATGTTAAAACCACCAACATTCTCGTTGACAACAATTTCGACGTCAAAGTCGCTGATTTTGGACTGTCTCGCCTTTTTCCTACGCAAGCTACGCATGTTTCAACTGCTCCACAAGGAACTCCAGGATATGTTGATCCAGAGTATTACGAATGTTATCAACTTACGAATAAAAGCGACGTGTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGATATCACAAGGCACAGACATGAGATTAACCTGTTGACGATGGCGATCAACAAGATCCAAAATGACGAATTACACGACTTTGTAGATCCATATCTTGGATTCAAAACAGATGAAAGGATCAGAGACATGATATGTGGAGTTGCAGAGTTGGCATTTCAATGCCTGCAAAGTGTGAGGGATACAAGACCCTCAATGTTTGAGGCTCTAGAAATTCTGAAGAATATAGAGTAG 1017 42.67 MSLIFFIRLRLHKNKHSHASSSILLQNNNSRDRLMKELEKGENYMAVPLFSYQELVQATNKFNPANQLGDGGFGTVYSGKLLDGREVAVKRLFENNYRKVEHFLNEVEILTRLHHPHLVTLYGCTSRRSRELLLVYEFVPNGTVADHLHGIQARPGELPWVTRLKIAIETASSLAFLHASKTIHRDVKTTNILVDNNFDVKVADFGLSRLFPTQATHVSTAPQGTPGYVDPEYYECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLLTMAINKIQNDELHDFVDPYLGFKTDERIRDMICGVAELAFQCLQSVRDTRPSMFEALEILKNIE 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25947478 25948797 + ClCG04G010968.1 Cla04g01079 271307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01079 338 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Cla04g01079 338 Gene3D Phosphorylase Kinase; domain 1 33 138 - -
Cla04g01079 338 Pfam Protein kinase domain 65 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01079 338 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 338 IPR044652 -
Cla04g01079 338 SUPERFAMILY Protein kinase-like (PK-like) 40 334 IPR011009 -
Cla04g01079 338 PIRSF ILK 50 338 - -
Cla04g01079 338 Gene3D Transferase(Phosphotransferase) domain 1 139 338 - -
Cla04g01079 338 ProSiteProfiles Protein kinase domain profile. 62 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01079 338 SMART serkin_6 62 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01079 338 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 338 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01079 Cla06g01453 CCT
Cla04g01079 Cla06g01453 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01079 Cla-Chr4:25947478 Cla06g01453 Cla-Chr6:28092258 2.65E-156 dispersed
Cla04g01076 Cla-Chr4:25908676 Cla04g01079 Cla-Chr4:25947478 3.44E-27 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80514 PF00069 Pkinase 1.00E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01079 - - csv:105436377 581.637