Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01216 ATGTTTGGTGCCAATCCAGAGACACCTCCCTTCCATTTTCTCACCATCAACACTCATTGCTTCCTCTCGATCTCGATCTCGATCATGGAAGCCCTTCATCTTCCCTACGAAATCCACCCCCATTCCCTCGCCGCCGCCGTCAAGGATCGGAGACCAGAGATTCAGGAGCTGCCGGAGCCGGACATCCATATCGCTACCTCCGGTGGACTTCGTATACCTGCGCATTCTACCATACTGGTACTCCATCCCACTTCAAATTTCGCCTTTAAATGTCGGTTAGTTGCAATTGCAATTAGACCTCACAAATTAGGGTTCGGAATTTCGTCGCCTGCGATTTGCTTGATTTTGCATTGGATTGGGGAATCTGGTTTCCCTTCTTTCTATTCTTCTATTGAATCGATTTCGATTACAGGCCTCGGTTTCATCGGTGCTAGAAAACATGATCGAGCAACCGCGAAAGCACCGGAGCTCCGAGAAAGTTATTCAAATTCTCGGCGTTCCGTGCGAGGCAGTCCCAGTCGATCGAGTCCAGTCAATCTTGGTAGGCGGAGTAAGTCTAAATTTGCCGGCGTTGCCTTTAGGTGCCCTGAAGAATATCTAAGGAAATATGGAATTCATCTTTTGGCGCTATCGCACGTTTACCTTGTTCCACATTTGAAGCAGCGATGCACCAAGCACTTGGCTCGAAATTTGACCATCGATAGCGTTATCGACATACTCCAACTCGCAAGAATGTGCGATGCACCAGATCTCTCACTCAGCTGTATGAAAATGGTGTCCAGCCACTTCAAGGCCGTCGAGAAAACGGAGGGCTGGAAATTCCTGCAAAAACACGACCCCTGGCTCGAGCTTCAAATTCTGCAGTTCATGGATGAATCCGAATTGAGGAGAAAGAGATGCAGAAGGCAGAGGAAGGAGCAGAGGGTGTATCTTCAGCTAAGCGACGCAATGGAGTGCTTAGAGCATATCTGTAAAGAAGGGTGTACAAACGTTGGGCCGCTGGACGTGGAACCCACAAAGAAGCAGCCATGTTCGAAATTTACAACGTGTCATGGAGTTCAGCTTCTGATTAAGCACTTTGCAACGTGTGAGAACAGAGTCCATGGAGGAGCCTGCTGGCGGTGCAAACGGATGTGGCAGCTTCTACGCTTGCATGCCTCCATTTGCGACCAATCCGATGCTTGCAAAGTCCCTCTTTGCAGGTTCATTCTCAATACCCCCTCTTTTTACGCCATACCTAAATTCTACCCTTTCCACCAAACTTTGATTTGA 1272 48.58 MFGANPETPPFHFLTINTHCFLSISISIMEALHLPYEIHPHSLAAAVKDRRPEIQELPEPDIHIATSGGLRIPAHSTILVLHPTSNFAFKCRLVAIAIRPHKLGFGISSPAICLILHWIGESGFPSFYSSIESISITGLGFIGARKHDRATAKAPELRESYSNSRRSVRGSPSRSSPVNLGRRSKSKFAGVAFRCPEEYLRKYGIHLLALSHVYLVPHLKQRCTKHLARNLTIDSVIDILQLARMCDAPDLSLSCMKMVSSHFKAVEKTEGWKFLQKHDPWLELQILQFMDESELRRKRCRRQRKEQRVYLQLSDAMECLEHICKEGCTNVGPLDVEPTKKQPCSKFTTCHGVQLLIKHFATCENRVHGGACWRCKRMWQLLRLHASICDQSDACKVPLCRFILNTPSFYAIPKFYPFHQTLI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27299807 27301506 + ClCG04G012460.2 Cla04g01216 271444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01216 423 MobiDBLite consensus disorder prediction 164 181 - -
Cla04g01216 423 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 1-LIKE ISOFORM X1 44 82 - -
Cla04g01216 423 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 1-LIKE ISOFORM X1 192 402 - -
Cla04g01216 423 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 44 82 IPR044513 -
Cla04g01216 423 Pfam TAZ zinc finger 314 400 IPR000197 -
Cla04g01216 423 SUPERFAMILY TAZ domain 306 403 IPR035898 -
Cla04g01216 423 SMART TAZ_2 307 401 IPR000197 -
Cla04g01216 423 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 192 402 IPR044513 -
Cla04g01216 423 MobiDBLite consensus disorder prediction 153 181 - -
Cla04g01216 423 CDD BACK 232 275 - -
Cla04g01216 423 Gene3D - 230 302 - -
Cla04g01216 423 Gene3D TAZ domain 303 407 IPR035898 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01216 Cla06g01618 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00313 Cla-Chr3:3746140 Cla04g01216 Cla-Chr4:27299807 4.30E-28 dispersed
Cla04g01216 Cla-Chr4:27299807 Cla03g01381 Cla-Chr3:29263183 1.24E-08 dispersed
Cla11g00560 Cla-Chr11:6339552 Cla04g01216 Cla-Chr4:27299807 8.79E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60956 PF02135 zf-TAZ 4.90E-11 No_clan Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01216 - - bhj:120082700 421.394