Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00612 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGTGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGGTAAGCTTCCATCACCGGAGCAATTTGCTTGGCGCTACTTTTCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCGTGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGAGAGGCTAATATGGTTCGTAATTATATTACTTGCAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAATCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCAGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1242 45.65 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSGKLPSPEQFAWRYFSLADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPRAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSREANMVRNYITCRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPNRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5680576 5683632 + ClCG05G005780.2 Cla05g00612 272102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00612 413 SUPERFAMILY Tubby C-terminal domain-like 84 413 IPR025659 -
Cla05g00612 413 Gene3D Tubby Protein; Chain A 95 407 IPR025659 -
Cla05g00612 413 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Cla05g00612 413 Pfam F-box domain 38 82 IPR001810 GO:0005515
Cla05g00612 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 413 - -
Cla05g00612 413 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515
Cla05g00612 413 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Cla05g00612 413 Pfam Tub family 96 408 IPR000007 -
Cla05g00612 413 PANTHER TUBBY-RELATED 1 413 - -
Cla05g00612 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00612 Cla06g00505 CCT
Cla05g00612 Cla06g00505 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00612 Cla-Chr5:5680576 Cla08g00355 Cla-Chr8:8941658 1.37E-150 dispersed
Cla05g00612 Cla-Chr5:5680576 Cla06g00505 Cla-Chr6:6119251 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61027 PF01167 Tub 1.60E-102 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00612 K19600 - csv:101217713 750.355