Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00940 | ATGGCGTCGAAGAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCGCCTACATCATGTAGCGCTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCGGATTATCCTTTTAAGCCTCCTAAGCTTTCTTATTTCCTCCACTCACGATTGGATTTGCAGGTGGCATTCAGAACAAAGGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCCCTAACTATTTCCAAGGTCTTACTTTCAATCTGTTCACTGTTGACGGATCCAAATCCGGATGACCCGCTCGTGCCTGAGATCGCTCATATGTACAAGACTGACAGGAACAAATATGAGACAACCGCTAGGAGCTGGACGCAGAAGTATGCGATGGGCTAA | 483 | 46.79 | MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKLSYFLHSRLDLQVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9316029 | 9319673 | + | ClCG05G008640.2 | Cla05g00940 | 272430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00940 | 160 | CDD | UBCc | 3 | 154 | IPR000608 | - | |
| Cla05g00940 | 160 | ProSitePatterns | Ubiquitin-conjugating (UBC) active site signature. | 86 | 101 | IPR023313 | - | |
| Cla05g00940 | 160 | Pfam | Ubiquitin-conjugating enzyme | 5 | 153 | IPR000608 | - | |
| Cla05g00940 | 160 | SUPERFAMILY | UBC-like | 2 | 159 | IPR016135 | - | |
| Cla05g00940 | 160 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 3 | 157 | - | - | |
| Cla05g00940 | 160 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 160 | IPR016135 | - | |
| Cla05g00940 | 160 | SMART | ubc_7 | 4 | 159 | - | - | |
| Cla05g00940 | 160 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 159 | IPR000608 | - | |
| Cla05g00940 | 160 | PANTHER | BNAA01G32320D PROTEIN | 3 | 157 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla01g00205 | Cla05g00940 | CCT | |
| Cla01g00205 | Cla05g00940 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00940 | Cla-Chr5:9316029 | Cla01g00205 | Cla-Chr1:2033852 | 6.08E-95 | dispersed | |
| Cla11g01764 | Cla-Chr11:31262144 | Cla05g00940 | Cla-Chr5:9316029 | 3.40E-10 | dispersed | |
| Cla02g02325 | Cla-Chr2:38350508 | Cla05g00940 | Cla-Chr5:9316029 | 1.03E-44 | transposed | |
| Cla07g00982 | Cla-Chr7:26014326 | Cla05g00940 | Cla-Chr5:9316029 | 3.20E-42 | transposed | |
| Cla09g00979 | Cla-Chr9:10285679 | Cla05g00940 | Cla-Chr5:9316029 | 5.82E-91 | transposed | |
| Cla01g00064 | Cla-Chr1:542564 | Cla05g00940 | Cla-Chr5:9316029 | 1.80E-106 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00940 | - | K06689 | cit:102614401 | 305.449 |