Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02374 TGTTTCCATATGTTTCATCCTCCACTCTACATTCAATACACTGATAAAAAAAAGAAGAAACTAAACTCTAGCTCCATCTTCTTCTTCCTCCCCCTAGCCGCCGACACCCCTTCCTTCAGTCTTCTTCGCCGGCGACCTCACCCACGAGCAGCAGCGTCCACACAGACGCCGACGACCAGTCCTCGCGCATCAGACGATTCAGACCGACGTGCTTTTGCTCCACGTTCGACGGCGGAGCTAGCCTGCGACGTGAACACCCACTTCGAACAAGTTCCGAAGATCCTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCTCGGCTTGAAGCGGAATCCGTCACTACCTCCTTCGTTCTGGACCAGAATGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTTGTTTCTACTTTGAGCGAAACTGTAGTGGATGAGGTTCTTGATAGCTTGAGAACTCAGAATCCTGATGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAATGAGTACGGATTTCGGCATTCCAGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCGGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCAATTGCTTGAGGAGCAAGGGTCTGGTTCTGCATCTACATGTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATAGTGTGGTATGGGATACGCTGGCATTTGTATACTCTAGACATGAAATGATCCATGATGCCCTCTTCGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGAATCTATACAGTGAGATAAAAGTTAGAGCTCCCCATAGTGAATATACTAACTCAATACTTATGCACGGCCTATGTGAGCAATCCAAGTTACAAGATGCAATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAAGTTTTGCAAAGTGGGGCTAATAGATGTTGCGAGGTCATTTTTTTGTTTGATGGTAAAAAATGGACTGCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCGGATCTTGTGACATATACAATACTGATGTGTGGACATTGTCAAATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGCGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTTTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTGCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAAGTATTTTGATGCTTTGACTCACATGGATCTGATAGAGGATGTTATTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTGCAGAATGATTGAAAGGGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTATCAAAGGATTCTGCAGAATGGGAGACCTAGTGGAGGCTCGAAAGATGTTGGAAGTTATTAGGTCGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATCTTCTTCATGAGATGGAGGCAAACGCTGTTGTTCCAACTCATGTAACTCATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAGGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACAATTATCCAATGTTTATGCAAGGAAAGAGACATTGACAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATATATGGTGACCTAAAGGATGCTGATCGAATGCTAGTTTCTATGGAGGATCGAAATATAAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCGTTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCATAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGTTTTCCATCAACAGGGCGACAACAGTTTAGTGTTAGAATTCCTTGCTATGGTGGTTAAATCTGGCTTTATTTCACATCGATCCATTCCTTGCTATGGTGGTTGA 2748 40.65 CFHMFHPPLYIQYTDKKKKKLNSSSIFFFLPLAADTPSFSLLRRRPHPRAAASTQTPTTSPRASDDSDRRAFAPRSTAELACDVNTHFEQVPKILASFSSVILARPSVSAARLEAESVTTSFVLDQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDEVLDSLRTQNPDVAVAFFYLLRNEYGFRHSRFSQFAVSHILAGKGRFKELHSVIKQLLEEQGSGSASTCCDLLLNKFRNWDSNSVVWDTLAFVYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWNLYSEIKVRAPHSEYTNSILMHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFENGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDIAEAMQLYCRMIERGITPSVVTFNTLIKGFCRMGDLVEARKMLEVIRSNGLLPSVVTYTTLMNAYCEVGNMQEMFHLLHEMEANAVVPTHVTHTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDPVTYNTIIQCLCKERDIDKAFQLYNKMLLHNLDPTHVTYNVLINGLCIYGDLKDADRMLVSMEDRNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGITPDSEICETMLNVFHQQGDNSLVLEFLAMVVKSGFISHRSIPCYGG 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35304103 35311649 - ClCG05G023480.1 Cla05g02374 273864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 410 475 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 338 409 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 588 654 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 149 308 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 725 795 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 655 724 IPR011990 GO:0005515
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 696 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 732 766 IPR002885 -
Cla05g02374 915 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 92 905 - -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 802 836 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 837 871 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 767 801 IPR002885 -
Cla05g02374 915 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 92 905 - -
Cla05g02374 915 SUPERFAMILY HCP-like 438 652 - -
Cla05g02374 915 Pfam PPR repeat 447 477 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 476 587 IPR011990 GO:0005515
Cla05g02374 915 Pfam PPR repeat family 731 779 IPR002885 -
Cla05g02374 915 Pfam PPR repeat family 592 640 IPR002885 -
Cla05g02374 915 Pfam PPR repeat family 487 535 IPR002885 -
Cla05g02374 915 Pfam PPR repeat family 346 394 IPR002885 -
Cla05g02374 915 Pfam PPR repeat family 661 710 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 796 910 IPR011990 GO:0005515
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Cla05g02374 915 Pfam PPR repeat 841 869 IPR002885 -
Cla05g02374 915 Pfam PPR repeat 804 832 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 664 697 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 489 522 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 629 662 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 734 767 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 804 837 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 699 732 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 841 873 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 769 801 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 454 487 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 524 557 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 349 383 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 595 627 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 384 418 IPR002885 -
Cla05g02374 915 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02374 Cla-Chr5:35304103 Cla03g01216 Cla-Chr3:25949654 1.58E-61 dispersed
Cla05g02374 Cla-Chr5:35304103 Cla02g01383 Cla-Chr2:28248026 2.65E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02374 - - bhj:120081514 1480.31