Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00643 ATGAAGCACCATCAAGATCAAGAAACCACCGCCACCTCCGCCGCTAGTACACTCAATTTCAAGTTTCCCACCACCTCCCATGGCTACACAATCATTACTCAGATCGGTGTCAGCCCCCACAGCATTGTGTACATGGCCAATTGCAAGTCGGAAGACTCGACCACCGTCACCGTCGCCATAAAGATTATCGATGTCGATAACAACATCAACCTCAATTCCCTGAACGCTTCACTATCACTCATCGACCACCCCAATATTTTCCGGCCACATTGTTGTTTCGTCGGCGACGATGCCCGCATTTGGATCGTCATGCCCTTCATTCCGACCGGCACTTTACAATCCATTCTGTCCCGCAGTTTCCCTAGAGGTATGCCAGATCAATTCACCTCCATTATTTTAAACCAACTCCTCCGTGCTTTAGTTTATCTTCACGAATTGGGGTTTGTTCATAAAGCCATTAAACCAAGTAATATCTTCTTCGATTCACAAGGCTCTGTTAAGCTCTCTGTTTTTGATATCATGATCTCCAAGAACAATATTAACAAAATTGATCATGATTCTTCAATTCCTTATTGGGTCCCACCGGATGAAGTATATTGTTTCGAATCAGATATTTGGGTACTTGGGGTTTTAGCTATGGAAATTACTTGGGGGGGTCCTCCAATTATAGACCCAAGACTTCTTGAATCACAATCGTTTAATATCTCAAGAAGGTTTCCCTATGAATTGAAAACAGAGAAGAGTGAGAGACAAAGGGACAGAAGATTATTTGGAGATGGTGTTAAAGAATTTGTGAAATGTTGCCTTGTCAAAAATCGGTTTGAAAGGCCGACGGCTTCGAGTTTGTTGAGTCATCCATTTGTGCAGAAAGGGGAAAAGCCGAATTTTTTATTCAAGAGTATTCCAAAAGGAGTGATTGACATTGATCAAAGATTTGAACAAGAAAAGGAAAGAATGATTGGGTTGATGAAAAATGATGAGAAATTGAAGATTGAAAGGGACAGGACTATGAAGATTAGAGGATGGGACTATAATAATTTTTTGTTCGAACTTGAACCTGATGAGGAATCAGTAGGGAAAAGAGTTCGATTTGGTGGGGAAATCGTAAGGCAATTTAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGCAAGAAAGTTGATGATATGTTATCTCTACTTCAGAAAATACAGAGTAATTTGAGTGGTGCTGGTGAATCAAGCAAGGCTGGTGAGAAGAAGAAGAAGATTGTTGATGAAAGTTTAGTGAAAATGTTATCTTCATTGTTTGGTAATATTGATCAACAAAGGGATATGGTTTTGAAGTTGATGAATCATCTTAGTTATTTGAGTGAAAAACAGTTGGAAATGAGTAATGAAATCAAAAGGTTAGAGGCAGATTTGGCTTCTGAGAAAGAAAGATACTTTCAATTAGAGTTGGAATGTGAGTTTCTAAAGCTAAAAGTTCCTGATTCTGAGGATGAAAACGAATATTCTGATGAGGAACAACAAGAATATTGGGAGTAG 1536 39.13 MKHHQDQETTATSAASTLNFKFPTTSHGYTIITQIGVSPHSIVYMANCKSEDSTTVTVAIKIIDVDNNINLNSLNASLSLIDHPNIFRPHCCFVGDDARIWIVMPFIPTGTLQSILSRSFPRGMPDQFTSIILNQLLRALVYLHELGFVHKAIKPSNIFFDSQGSVKLSVFDIMISKNNINKIDHDSSIPYWVPPDEVYCFESDIWVLGVLAMEITWGGPPIIDPRLLESQSFNISRRFPYELKTEKSERQRDRRLFGDGVKEFVKCCLVKNRFERPTASSLLSHPFVQKGEKPNFLFKSIPKGVIDIDQRFEQEKERMIGLMKNDEKLKIERDRTMKIRGWDYNNFLFELEPDEESVGKRVRFGGEIVRQFKKEEEEEEEEEEEESKKVDDMLSLLQKIQSNLSGAGESSKAGEKKKKIVDESLVKMLSSLFGNIDQQRDMVLKLMNHLSYLSEKQLEMSNEIKRLEADLASEKERYFQLELECEFLKLKVPDSEDENEYSDEEQQEYWE 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7924745 7926280 + ClCG06G006775.1 Cla06g00643 274835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00643 511 Coils Coil 369 393 - -
Cla06g00643 511 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 15 498 - -
Cla06g00643 511 SUPERFAMILY Protein kinase-like (PK-like) 26 300 IPR011009 -
Cla06g00643 511 Coils Coil 457 484 - -
Cla06g00643 511 Gene3D Transferase(Phosphotransferase) domain 1 25 326 - -
Cla06g00643 511 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 15 498 - -
Cla06g00643 511 ProSiteProfiles Protein kinase domain profile. 29 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00643 511 Pfam Protein kinase domain 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00470 Cla06g00643 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00643 Cla-Chr6:7924745 Cla09g01858 Cla-Chr9:36281233 1.56E-43 dispersed
Cla05g00470 Cla-Chr5:4284570 Cla06g00643 Cla-Chr6:7924745 9.48E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80627 PF00069 Pkinase 6.10E-30 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00643 K08835 - cpep:111806976 459.529