Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01223 ATGACATTAGACAATTTTATAATTAGTAACTGTTCACAAAATCTAATCCTCCATCTTTTTGGTTGGTCTTTTCTCAGAACCATCATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATGTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGATACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTACAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCACCTACGCACGTAGACGATGAATTAAAAGATGATCACGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1104 40.76 MTLDNFIISNCSQNLILHLFGWSFLRTIMKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENVEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSTTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPTHVDDELKDDHEVKGFKLFGVHIK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25468459 25470467 + ClCG06G012290.2 Cla06g01223 275415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01223 367 Gene3D - 190 316 IPR015300 -
Cla06g01223 367 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Cla06g01223 367 SMART B3_2 195 310 IPR003340 GO:0003677
Cla06g01223 367 ProSiteProfiles B3 DNA-binding domain profile. 195 310 IPR003340 GO:0003677
Cla06g01223 367 Pfam B3 DNA binding domain 195 294 IPR003340 GO:0003677
Cla06g01223 367 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Cla06g01223 367 CDD B3_DNA 194 306 IPR003340 GO:0003677
Cla06g01223 367 SUPERFAMILY DNA-binding pseudobarrel domain 194 294 IPR015300 -
Cla06g01223 367 PANTHER DNA-BINDING PROTEIN RAV1 29 366 - -
Cla06g01223 367 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 366 IPR044800 GO:0003700
Cla06g01223 367 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Cla06g01223 367 Pfam AP2 domain 72 119 IPR001471 GO:0003700|GO:0006355
Cla06g01223 367 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Cla06g01223 367 SUPERFAMILY DNA-binding domain 72 129 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01321 Cla-Chr3:28238405 Cla06g01223 Cla-Chr6:25468459 2.91E-103 dispersed
Cla05g02328 Cla-Chr5:34860451 Cla06g01223 Cla-Chr6:25468459 9.67E-57 dispersed
Cla06g01223 Cla-Chr6:25468459 Cla10g01776 Cla-Chr10:33700239 1.14E-28 dispersed
Cla06g01223 Cla-Chr6:25468459 Cla01g00124 Cla-Chr1:1170541 4.31E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61293 PF02362 B3 9.90E-24 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01223 K09287 - csv:101212246 625.935