Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01453 ATGAAGACGTTTCTGGTGCCCACCCATTTTGATCATAACGCCGCCGCACTCTTCACCTTCGCCACCGCCTTCCTCCTCTGCTTTCCCTCCTCTCTCGCCGACGACGATTATCCTCCTCCCTCAGTTACTGTAATATTCCCAATTCCAATGGGCAATTTCGTCAAAAACCACACCCACTCAAAATCCCACAAAATTCAGCATGACCCAGTAAAATTTGTTGAAGAACAGGTAAAGTTTCCCACTAGTTTTTCTTTTTTAATTTCCTTACTCTGTTTACCCATTGTTGAAGAAAGCAATTTCATTTCTCCTTCCATTTTTCCTCAACTTCCTCTCATGGCTTTCAAAATCCAAACCCTCTTCAAACCCTCTCTTATTTGCTTCTTTACATTCATCTTCTTCTCGGTCTCAGCTTCTGAAACATTCAACGACTGTGCGCCTAGAAATTGTGGGCATGGCCCTGTTATAAAATACCCCTTTTGGATAGATGGTGAGCAAGATTCTTCCTGTGGATACCCAGATTTCAAAATCAAATGCTCTAGACATTATTACCCAGTTCTTGAAATTTCCGGTGAAGATTTTGTCGTTGAAGATATTTTTTACCAAAGCAATTCGTTTCTGTTGGTCAGTGCTGCTGCAGCTTACAACGATGAACATTCATGCCCATCAAGTGACATTAGCCTCGATAGAAAACCATTCCATTTTACTTCAGATAATGAAGATTTCTTCTTCTTCTATGATTGCCCTTTAGTTCATAAAGATTACATCTATGAACTTAACTGTACTACCAACAAAACCCAGTTTTCTTTTGCGACTTTCCACAAGGATTTTCTGCAGTTTGAGAACTTTCCTTTACAGTCATGTCATTCTTCAATTCGTGTTCCTGTCCGCAAGAACTCGACTGCTAATTTAACTGATTTGAGGCAAATGAGTTATGTTGATATTTGGAAGAGGGGTTTTGTTCTGAATTGGACTGCAAAGGACTGCAGCAAATGTGAGCAAAGTGGTGGCTATTGTAGATTGGAGAACAATAAGTTTGTTTGTTCTTGTAGCGATGGAACTCATTCCAATAGCTGCAAACAGGAAAAAAGCACGACCCGAAGAAAGATCATCATTGGGTTGTGCACTGGTTTTGGAGCCTTGCTTTTAACCTTTCTTGTTCTTGGCATCTGCTATCGATGGCGCCAGCTTCGTCGTAGAAGGTCTCACGCGTTGCCGTATGTGCAACGAAGCATTCCATCAAATCCACCGAATCCTCCGAACCCGTCTTCTGTGGAAGAAGTTGAGAATGGAGGTACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACAAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCTTACTCAAAGACGGGCGTGCTGTTGCTGTCAAACGGTTGTATGAAAGCAATTTTAAGAGAGTTGAGCAGTTCATGAATGAAGTGGAGATCCTTGCTCGTTTGCGCCACCGCAACCTTGTTTCGCTTTATGGTTGCACCTCACGCAGTAGCCATGAGCTTCTGCTTGTGTATGAATACGTTCCAAATGGCACGGTGGCTGATCACCTCCACGGAAAACTAGCAAAGTCTGGCAAGCTTCCATGGTGTACAAGAATGAAGATTGCAATAGAGACTGCAAGCGCTTTGGTTTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTCGACAACAACTACTGCGTTAAAGTAGCGGATTTCGGATTGTCCCGACTCTTCCCACTCGATGTCACACACGTTTCAACCGCTCCACAAGGCACTCCAGGCTATGTCGATCCAGAGTACCATCAGTGCTACCAACTCTCTGACAAAAGCGATGTCTTTAGCTTCGGTGTGGTACTTGTTGAACTCATATCCTCAATGCCTGCTGTTGACATCACAAGGCATAGACAAGAGATCAACCTATTCAACATGGCCATCAACAAGATCCAAAGCCACACATTGCACGAACTGGTCGACCCATCGCTCGGTTTCAAAACAGACTACAAAATCCAAGACATGATAACCAGCGTAGCCGAGTTGGCGTTTCGATGCCTGCAAAGCATGAAAGACGAGAGACCCACAATGATGGAAGTTCTCGACACTCTGAACATCATACAAAAACAGAACGCCGAGAAGACAACAGATCAAGAGGCCGACATTTCAGACGATGCTGTGTTGCTAAAGAATGGCTATGGATCTTCTCCAAGTTCCGTTTCTGTATCTTGGGTTAGCAGCAACACCTCAACAGCAACTAATGAAACCATCAGCTCTTAA 2337 43.6 MKTFLVPTHFDHNAAALFTFATAFLLCFPSSLADDDYPPPSVTVIFPIPMGNFVKNHTHSKSHKIQHDPVKFVEEQVKFPTSFSFLISLLCLPIVEESNFISPSIFPQLPLMAFKIQTLFKPSLICFFTFIFFSVSASETFNDCAPRNCGHGPVIKYPFWIDGEQDSSCGYPDFKIKCSRHYYPVLEISGEDFVVEDIFYQSNSFLLVSAAAAYNDEHSCPSSDISLDRKPFHFTSDNEDFFFFYDCPLVHKDYIYELNCTTNKTQFSFATFHKDFLQFENFPLQSCHSSIRVPVRKNSTANLTDLRQMSYVDIWKRGFVLNWTAKDCSKCEQSGGYCRLENNKFVCSCSDGTHSNSCKQEKSTTRRKIIIGLCTGFGALLLTFLVLGICYRWRQLRRRRSHALPYVQRSIPSNPPNPPNPSSVEEVENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLYESNFKRVEQFMNEVEILARLRHRNLVSLYGCTSRSSHELLLVYEYVPNGTVADHLHGKLAKSGKLPWCTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNNYCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAINKIQSHTLHELVDPSLGFKTDYKIQDMITSVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNAEKTTDQEADISDDAVLLKNGYGSSPSSVSVSWVSSNTSTATNETISS 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28092258 28101658 + ClCG06G014640.2 Cla06g01453 275645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01453 778 SUPERFAMILY Protein kinase-like (PK-like) 433 721 IPR011009 -
Cla06g01453 778 SMART serkin_6 451 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01453 778 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 124 766 - -
Cla06g01453 778 ProSitePatterns Protein kinases ATP-binding region signature. 457 479 IPR017441 GO:0005524
Cla06g01453 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Cla06g01453 778 Pfam Protein kinase domain 452 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01453 778 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 124 766 IPR044652 -
Cla06g01453 778 Gene3D Transferase(Phosphotransferase) domain 1 528 750 - -
Cla06g01453 778 ProSiteProfiles Protein kinase domain profile. 451 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01453 778 Pfam Wall-associated receptor kinase C-terminal 265 352 IPR032872 -
Cla06g01453 778 Gene3D Phosphorylase Kinase; domain 1 424 527 - -
Cla06g01453 778 Pfam Wall-associated receptor kinase galacturonan-binding 144 208 IPR025287 GO:0030247
Cla06g01453 778 MobiDBLite consensus disorder prediction 753 778 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01079 Cla06g01453 CCT
Cla04g01079 Cla06g01453 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01079 Cla-Chr4:25947478 Cla06g01453 Cla-Chr6:28092258 2.65E-156 dispersed
Cla06g01453 Cla-Chr6:28092258 Cla11g00744 Cla-Chr11:10625130 7.78E-174 dispersed
Cla04g01076 Cla-Chr4:25908676 Cla06g01453 Cla-Chr6:28092258 3.70E-11 wgd
Cla05g02281 Cla-Chr5:34430509 Cla06g01453 Cla-Chr6:28092258 1.27E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80655 PF00069 Pkinase 3.90E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01453 - - cmo:103494139 1204.5