Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01164 | ATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTATCAAGGGAAAGACTCGTGTACATCTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCTGTAAGTCTTCAGCTCTTACGGAGTGTAAGTCGACCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGTGGAGCTGGGACTGCCGTTCTAAACTCTGCAGCTGTAGTTTTGACAAGATCTTATGATGCTTTACGAGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATACTATTTCTTCATGAGCCGGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTCGCTTCTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTAACAGCTGGGGGTCTCGGAACCGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTCGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCATGTTGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACGGTTAGTATTGTGAGGAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTCTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCACCATAGGGCCCGCCTCGCCACCCCCATTCGCACTGTGCAGAAAATATATGGCGAAGCTGATTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTTCCAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCTAACGAAGAAAAGGAAGCGAAACAAGAGGCAGTCTCAATGTCAGGGACAAAAGCCCCCGACACAGCTGGATCAACATCAAATCTAGCAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTCATAGGAATGAATTCCAAGGACAATATGCCACGAGGGACTCCGCCCAAAAGATCTCCCTCAGCTTCCAGTCCTAGCAGTGAGAAAGCTGATATTCCTTCCTCAAGCTCACAGAATAAGCAAGACGGCGAGAAGACCTCTGCATCGCCATCAGTGGCGAGGGCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCGTTAGAAGGCTCGAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTCCCGGCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA | 1989 | 43.34 | MVHPGSTQFSHKLGIQSVHGCNKLHISIKGKTRVHLVTIVPSSHGLRHDPVSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSNRPLLLIEPSYKVNGDDKTKVSSRPTRSSNEEKEAKQEAVSMSGTKAPDTAGSTSNLASNEIKGEKKDVIGMNSKDNMPRGTPPKRSPSASSPSSEKADIPSSSSQNKQDGEKTSASPSVARAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPGNSKDMKDGQMPAVPGATKND | 662 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24475189 | 24480802 | + | ClCG08G011680.1 | Cla08g01164 | 278819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01164 | 662 | Gene3D | - | 194 | 296 | - | - | |
Cla08g01164 | 662 | MobiDBLite | consensus disorder prediction | 492 | 662 | - | - | |
Cla08g01164 | 662 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 572 | 654 | IPR045042 | - | |
Cla08g01164 | 662 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 1 | 556 | IPR045042 | - | |
Cla08g01164 | 662 | SUPERFAMILY | Sm-like ribonucleoproteins | 282 | 352 | IPR010920 | - | |
Cla08g01164 | 662 | MobiDBLite | consensus disorder prediction | 618 | 632 | - | - | |
Cla08g01164 | 662 | Gene3D | - | 298 | 353 | IPR023408 | - | |
Cla08g01164 | 662 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 572 | 654 | - | - | |
Cla08g01164 | 662 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 1 | 556 | - | - | |
Cla08g01164 | 662 | Pfam | Mechanosensitive ion channel | 239 | 446 | IPR006685 | GO:0016020|GO:0055085 | |
Cla08g01164 | 662 | MobiDBLite | consensus disorder prediction | 521 | 538 | - | - | |
Cla08g01164 | 662 | MobiDBLite | consensus disorder prediction | 562 | 594 | - | - | |
Cla08g01164 | 662 | MobiDBLite | consensus disorder prediction | 492 | 517 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01164 | Cla-Chr8:24475189 | Cla10g00731 | Cla-Chr10:11724317 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01164 | K22047 | - | csv:101213477 | 1201.81 |