Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00073 ATGCAACGCTTTCGAGCTATGGCAACTCCCATGGCTGAAGAAGCAACCATCGATTCCAATTCCACTGCCCACACGGTGATCGCCATTAGTAGGGACAAGAACAGTCAATATGCGGTTAAATGGGCTGTGGAACACCTGTTCAATAGGAAGAACACTGGCGATTGCATCCTTATCCATGTTCGCAACCAGAGTTTGCATCCCCAGGAGGCGGATGCGGTTCCTAAGGAGTATCGTCCACCATCTGAAGCAGAGTTGCATCAGTTCTTCCTTCCCTATCGAGGATTCTGCGCACGAAAAGGAATAGTTACAAAGGAGACAATCATCCATGACATTGATGTTCCAAGTGCACTTATTGACTATGTCAGTAAACATTCCATTAGCAATATTGTTGTGGGTGCTTCCAGCCGGAATGCTATTTTGAGGAAGTTCAAGAATCCTGATGTCCCAACGTGCTTACTCAAATCAACTCCAGAATCATGCTCTGTATATGTCATAGCTAGAGGAAAAGTTCATACTAAGAGATTGAGAAAGCGACATAAGTCACAGACTGATGTGAGAGAAACTCAAACCAGAACTCCAGAAATCGACAGGTCTCTATCAAAAATACAAAAATCAGCATATTCTAATATCTCAGAACTATCTGAAGATAGAAACAGGGATAGTTCTGGCACCAGTAATGATTCAATGTCAGGCATTAGTGACTTTTCGGGGCCTCTCAGTTTCAAATCAATTGAAACATCCTTTGAGAGCCCAGATTTTTCCTTAACCTCCTCAGAGACTAGTACGAGGAGCTTTGTCTCCTCTAACACCCCACCTTCCATTGAATCTGAGATGAGAAAGTTGAGGTTTGAACTCAAACAGACGATGGAAATGTATGACTCAGCTTCCAAGGAAGCTGTAGTAGCAAAACAAAAGGCAAATGAACTCCAACAGTTGAAGATGGATATGGAAGAAGACAGAAAAATTGAGCGTGGTAAATCTGCAGAAGAGGTTCTTAGAGCATTGGCAGAGTTTGAGAAGCAGAAGAACAAGGCTGCGACAGAAGCAGCTCTAATGGCGCAGAAGTTAGCCGAATTAGAGAACCAGAAAAAACGAATTGTTACTGAAGAAAAAGCTAGGATTGAGGCAGAGGAGAGGAAGAAAACAATGGAGTTATTTGAACGCAGTAATATCTGTTATAGACGATACAGCATTGACGAGATTGAAGCTGCAACAGATCATTTTAATGAGTCAAACAAGATTGGTGAAGGTGGCTATGGACCTGTTTACCAAGCCTTACTTGATCATACTCCTGTTGCCATTAAGATATTGCGACCAGATAGATCTCATGGGCAGAGACAATTCCAGCAAGAGATTGAGGTTCTAAGCCGCATGAGGCATCCGCACATGGTTCTCCTCTTAGGTGCCTGCCCAGAATACGGTTGCCTTGTTTATGAATATATGGAAAACGGGAGTTTGGAAGACCGCCTCTTCCAAAAAGATAACACTCCTCCAATGCCTTGGAGAACACGTTTCAGGATAGCTTCTGACATTGCCACTGCCCTACTCTTCCTTCATCAAATGAAGCCAGAACCTGTGGTGCATCGTGATCTCAAGCCAGCCAACATTCTCTTAGATCACAACTACGTGAGCAAAATAGGTGATGTGGGTTTGGCCAGGCTAGTTCCACCATCGGTTGCTGATAGTGTCACTCAATATCACATGACTGCTGCAGCTGGAACCTTCTGTTACATTGATCCAGAATATCAACAAACAGGAATGTTGGGGGTGAAATCAGATATTTACTCATTTGGTGTTCTGCTACTTCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTTGAGGAGGCCATTGAACATGGCAAATTCCCGCAGATACTTGATCCTGCCATTACAGATTGGCCTATTGAAGATACTCTTGGACTCGCTCAATTAGCCCTGAAGTGCTGTGAGCTAAGGAAAAGAGATAGGCCCGACCTCCGTACAGTTCTATTGCCAGAACTGGTCAGGTTAAAAAATCTGGGGTCAGGCGAAATGCCACCAAAGGGTAAGCTCCCAAATGTCGGCAAAGCGCGTGATCAACGGGCTTCCAACTCAGTTCCAATTTTGAATGGATCAGAGAGTGAGGAAGGAATGAGAAACAATCCTAACCTGCCAATGGAAATTCAACGTAGATCTATATGGCAGCGATTGAAAGTGAGTACGAGATTTTGGAGCCAAAAGGGTATTGGTTTGAATACCGTTTCTCCGCAGATAAAGAAAAAATGGAGCTGGAACAACAGTGATGCAAAAGTCTTAAATATACCATTACCAATGAGTGGAAAACAAGTTGATGTACTCTCAAAGAAGCAGCAAAGCTCTGAACGCTGTTGGTCTTTGGTAGGTTGTGCTTCTGCTGCTACTATGGGCTTTAGCTTACGCGTTTGGGTTCGGCTGAGTTGCGCCGCCTTATACGTTTGGTTTGACCCGCTCTCTCTCTCTCTCTCAGATTTGGAGAGAATTGAGCGTAACCCTAAGCTTAGAACTCGAATCTCCACTATGGCTGACCATTCTTCCAATCGCGATACTGATTCAGGGTTTGATCATGGCTCACCTCAACCACGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGGAACTTCCAGCTTCCAACCTCCCCAGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACTGGTTGCGGTTACCTCGCTGGTGCTGTCGGCGGAGCATCTACAGGACTCGTATCCGGCGTCAAATCTTTTGAATCAGGTGATACTATGAAACTCCGGATCAATCGGATCCTGAACTCGTCTGGTCATTCAGGGCGTCTTTGGGGGAATCGGCTCGGCGTGATTGGGTTGCTTTATGCTGGTTTGGAGAGCGGGATTGAGGCTGTGAGGGATACGGACGATGTGTGGAACTGTATTGCAGCAGGACTTGGCACTGGTGCGCTTTATCGTGCAGCAAGAGGGGTGAGATCGGCGGCGGTGGCCGGTGCTATTGGCGGTGTCGTGGTTGGCGTGGCGGTGACGGGTAAGCAGATGTTGAAGCGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAAAACTTCCCTCTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTTCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTCAAGGTTCATGCTTGTGTAGGAGGGACAAGTGTCCGTGAAGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTCCTTATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTACCAACCCAACCAGAAAATTACCTTCATCGAATTGGCCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA 4500 45.16 MQRFRAMATPMAEEATIDSNSTAHTVIAISRDKNSQYAVKWAVEHLFNRKNTGDCILIHVRNQSLHPQEADAVPKEYRPPSEAELHQFFLPYRGFCARKGIVTKETIIHDIDVPSALIDYVSKHSISNIVVGASSRNAILRKFKNPDVPTCLLKSTPESCSVYVIARGKVHTKRLRKRHKSQTDVRETQTRTPEIDRSLSKIQKSAYSNISELSEDRNRDSSGTSNDSMSGISDFSGPLSFKSIETSFESPDFSLTSSETSTRSFVSSNTPPSIESEMRKLRFELKQTMEMYDSASKEAVVAKQKANELQQLKMDMEEDRKIERGKSAEEVLRALAEFEKQKNKAATEAALMAQKLAELENQKKRIVTEEKARIEAEERKKTMELFERSNICYRRYSIDEIEAATDHFNESNKIGEGGYGPVYQALLDHTPVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPPMPWRTRFRIASDIATALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGKFPQILDPAITDWPIEDTLGLAQLALKCCELRKRDRPDLRTVLLPELVRLKNLGSGEMPPKGKLPNVGKARDQRASNSVPILNGSESEEGMRNNPNLPMEIQRRSIWQRLKVSTRFWSQKGIGLNTVSPQIKKKWSWNNSDAKVLNIPLPMSGKQVDVLSKKQQSSERCWSLVGCASAATMGFSLRVWVRLSCAALYVWFDPLSLSLSDLERIERNPKLRTRISTMADHSSNRDTDSGFDHGSPQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCIAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTGKQMLKRPRVTLQKPNSLHKNFPLSLAALCPTLASNSTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVVIEELPANVADLL 1499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 688045 701557 - ClCG09G000810.2 Cla09g00073 279493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00073 1499 Pfam Protein kinase domain 408 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00073 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1195 1480 IPR027417 -
Cla09g00073 1499 SMART helicmild6 1379 1460 IPR001650 -
Cla09g00073 1499 Pfam DEAD/DEAH box helicase 1151 1312 IPR011545 GO:0003676|GO:0005524
Cla09g00073 1499 ProSiteProfiles Protein kinase domain profile. 408 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00073 1499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Cla09g00073 1499 SMART ultradead3 1145 1342 IPR014001 -
Cla09g00073 1499 Pfam Universal stress protein family 26 141 IPR006016 -
Cla09g00073 1499 CDD DEADc_EIF4A 1131 1328 - -
Cla09g00073 1499 Gene3D Transferase(Phosphotransferase) domain 1 481 677 - -
Cla09g00073 1499 Gene3D - 1116 1334 IPR027417 -
Cla09g00073 1499 MobiDBLite consensus disorder prediction 851 870 - -
Cla09g00073 1499 Gene3D Phosphorylase Kinase; domain 1 376 480 - -
Cla09g00073 1499 Pfam Tim17/Tim22/Tim23/Pmp24 family 913 1022 - -
Cla09g00073 1499 MobiDBLite consensus disorder prediction 252 273 - -
Cla09g00073 1499 SMART serkin_6 408 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00073 1499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 1126 1154 IPR014014 GO:0003724
Cla09g00073 1499 PANTHER OS02G0152300 PROTEIN 24 684 - -
Cla09g00073 1499 MobiDBLite consensus disorder prediction 181 198 - -
Cla09g00073 1499 MobiDBLite consensus disorder prediction 174 232 - -
Cla09g00073 1499 Gene3D - 1335 1499 IPR027417 -
Cla09g00073 1499 SUPERFAMILY Protein kinase-like (PK-like) 385 667 IPR011009 -
Cla09g00073 1499 CDD STK_N 25 168 - -
Cla09g00073 1499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1338 1499 IPR001650 -
Cla09g00073 1499 Coils Coil 328 379 - -
Cla09g00073 1499 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 1273 1281 IPR000629 -
Cla09g00073 1499 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 26 165 - -
Cla09g00073 1499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1157 1327 IPR014001 -
Cla09g00073 1499 Gene3D HUPs 11 166 IPR014729 -
Cla09g00073 1499 Coils Coil 278 322 - -
Cla09g00073 1499 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 24 684 - -
Cla09g00073 1499 CDD SF2_C_DEAD 1339 1469 - -
Cla09g00073 1499 Pfam Helicase conserved C-terminal domain 1352 1460 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01330 Cla-Chr8:26169949 Cla09g00073 Cla-Chr9:688045 1.43E-62 dispersed
Cla01g00806 Cla-Chr1:9464884 Cla09g00073 Cla-Chr9:688045 1.17E-45 transposed
Cla01g01643 Cla-Chr1:31265172 Cla09g00073 Cla-Chr9:688045 3.43E-12 transposed
Cla02g00462 Cla-Chr2:4479828 Cla09g00073 Cla-Chr9:688045 0 transposed
Cla05g02642 Cla-Chr5:37623867 Cla09g00073 Cla-Chr9:688045 2.77E-28 transposed
Cla06g00914 Cla-Chr6:15144866 Cla09g00073 Cla-Chr9:688045 5.99E-54 transposed
Cla08g01004 Cla-Chr8:22789988 Cla09g00073 Cla-Chr9:688045 0 transposed
Cla08g01256 Cla-Chr8:25473806 Cla09g00073 Cla-Chr9:688045 0 transposed
Cla10g01132 Cla-Chr10:25806437 Cla09g00073 Cla-Chr9:688045 1.78E-171 transposed
Cla10g01864 Cla-Chr10:34554306 Cla09g00073 Cla-Chr9:688045 4.51E-62 transposed
Cla11g01104 Cla-Chr11:22448886 Cla09g00073 Cla-Chr9:688045 2.35E-19 transposed
Cla11g00152 Cla-Chr11:1806239 Cla09g00073 Cla-Chr9:688045 6.65E-134 wgd
Cla07g01320 Cla-Chr7:30378278 Cla09g00073 Cla-Chr9:688045 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80779 PF00069 Pkinase 1.50E-41 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00073 K03257 - bhj:120085014 1406.73