Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00073 | ATGCAACGCTTTCGAGCTATGGCAACTCCCATGGCTGAAGAAGCAACCATCGATTCCAATTCCACTGCCCACACGGTGATCGCCATTAGTAGGGACAAGAACAGTCAATATGCGGTTAAATGGGCTGTGGAACACCTGTTCAATAGGAAGAACACTGGCGATTGCATCCTTATCCATGTTCGCAACCAGAGTTTGCATCCCCAGGAGGCGGATGCGGTTCCTAAGGAGTATCGTCCACCATCTGAAGCAGAGTTGCATCAGTTCTTCCTTCCCTATCGAGGATTCTGCGCACGAAAAGGAATAGTTACAAAGGAGACAATCATCCATGACATTGATGTTCCAAGTGCACTTATTGACTATGTCAGTAAACATTCCATTAGCAATATTGTTGTGGGTGCTTCCAGCCGGAATGCTATTTTGAGGAAGTTCAAGAATCCTGATGTCCCAACGTGCTTACTCAAATCAACTCCAGAATCATGCTCTGTATATGTCATAGCTAGAGGAAAAGTTCATACTAAGAGATTGAGAAAGCGACATAAGTCACAGACTGATGTGAGAGAAACTCAAACCAGAACTCCAGAAATCGACAGGTCTCTATCAAAAATACAAAAATCAGCATATTCTAATATCTCAGAACTATCTGAAGATAGAAACAGGGATAGTTCTGGCACCAGTAATGATTCAATGTCAGGCATTAGTGACTTTTCGGGGCCTCTCAGTTTCAAATCAATTGAAACATCCTTTGAGAGCCCAGATTTTTCCTTAACCTCCTCAGAGACTAGTACGAGGAGCTTTGTCTCCTCTAACACCCCACCTTCCATTGAATCTGAGATGAGAAAGTTGAGGTTTGAACTCAAACAGACGATGGAAATGTATGACTCAGCTTCCAAGGAAGCTGTAGTAGCAAAACAAAAGGCAAATGAACTCCAACAGTTGAAGATGGATATGGAAGAAGACAGAAAAATTGAGCGTGGTAAATCTGCAGAAGAGGTTCTTAGAGCATTGGCAGAGTTTGAGAAGCAGAAGAACAAGGCTGCGACAGAAGCAGCTCTAATGGCGCAGAAGTTAGCCGAATTAGAGAACCAGAAAAAACGAATTGTTACTGAAGAAAAAGCTAGGATTGAGGCAGAGGAGAGGAAGAAAACAATGGAGTTATTTGAACGCAGTAATATCTGTTATAGACGATACAGCATTGACGAGATTGAAGCTGCAACAGATCATTTTAATGAGTCAAACAAGATTGGTGAAGGTGGCTATGGACCTGTTTACCAAGCCTTACTTGATCATACTCCTGTTGCCATTAAGATATTGCGACCAGATAGATCTCATGGGCAGAGACAATTCCAGCAAGAGATTGAGGTTCTAAGCCGCATGAGGCATCCGCACATGGTTCTCCTCTTAGGTGCCTGCCCAGAATACGGTTGCCTTGTTTATGAATATATGGAAAACGGGAGTTTGGAAGACCGCCTCTTCCAAAAAGATAACACTCCTCCAATGCCTTGGAGAACACGTTTCAGGATAGCTTCTGACATTGCCACTGCCCTACTCTTCCTTCATCAAATGAAGCCAGAACCTGTGGTGCATCGTGATCTCAAGCCAGCCAACATTCTCTTAGATCACAACTACGTGAGCAAAATAGGTGATGTGGGTTTGGCCAGGCTAGTTCCACCATCGGTTGCTGATAGTGTCACTCAATATCACATGACTGCTGCAGCTGGAACCTTCTGTTACATTGATCCAGAATATCAACAAACAGGAATGTTGGGGGTGAAATCAGATATTTACTCATTTGGTGTTCTGCTACTTCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTTGAGGAGGCCATTGAACATGGCAAATTCCCGCAGATACTTGATCCTGCCATTACAGATTGGCCTATTGAAGATACTCTTGGACTCGCTCAATTAGCCCTGAAGTGCTGTGAGCTAAGGAAAAGAGATAGGCCCGACCTCCGTACAGTTCTATTGCCAGAACTGGTCAGGTTAAAAAATCTGGGGTCAGGCGAAATGCCACCAAAGGGTAAGCTCCCAAATGTCGGCAAAGCGCGTGATCAACGGGCTTCCAACTCAGTTCCAATTTTGAATGGATCAGAGAGTGAGGAAGGAATGAGAAACAATCCTAACCTGCCAATGGAAATTCAACGTAGATCTATATGGCAGCGATTGAAAGTGAGTACGAGATTTTGGAGCCAAAAGGGTATTGGTTTGAATACCGTTTCTCCGCAGATAAAGAAAAAATGGAGCTGGAACAACAGTGATGCAAAAGTCTTAAATATACCATTACCAATGAGTGGAAAACAAGTTGATGTACTCTCAAAGAAGCAGCAAAGCTCTGAACGCTGTTGGTCTTTGGTAGGTTGTGCTTCTGCTGCTACTATGGGCTTTAGCTTACGCGTTTGGGTTCGGCTGAGTTGCGCCGCCTTATACGTTTGGTTTGACCCGCTCTCTCTCTCTCTCTCAGATTTGGAGAGAATTGAGCGTAACCCTAAGCTTAGAACTCGAATCTCCACTATGGCTGACCATTCTTCCAATCGCGATACTGATTCAGGGTTTGATCATGGCTCACCTCAACCACGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGGAACTTCCAGCTTCCAACCTCCCCAGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACTGGTTGCGGTTACCTCGCTGGTGCTGTCGGCGGAGCATCTACAGGACTCGTATCCGGCGTCAAATCTTTTGAATCAGGTGATACTATGAAACTCCGGATCAATCGGATCCTGAACTCGTCTGGTCATTCAGGGCGTCTTTGGGGGAATCGGCTCGGCGTGATTGGGTTGCTTTATGCTGGTTTGGAGAGCGGGATTGAGGCTGTGAGGGATACGGACGATGTGTGGAACTGTATTGCAGCAGGACTTGGCACTGGTGCGCTTTATCGTGCAGCAAGAGGGGTGAGATCGGCGGCGGTGGCCGGTGCTATTGGCGGTGTCGTGGTTGGCGTGGCGGTGACGGGTAAGCAGATGTTGAAGCGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAAAACTTCCCTCTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTTCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTCAAGGTTCATGCTTGTGTAGGAGGGACAAGTGTCCGTGAAGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTCCTTATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTACCAACCCAACCAGAAAATTACCTTCATCGAATTGGCCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA | 4500 | 45.16 | MQRFRAMATPMAEEATIDSNSTAHTVIAISRDKNSQYAVKWAVEHLFNRKNTGDCILIHVRNQSLHPQEADAVPKEYRPPSEAELHQFFLPYRGFCARKGIVTKETIIHDIDVPSALIDYVSKHSISNIVVGASSRNAILRKFKNPDVPTCLLKSTPESCSVYVIARGKVHTKRLRKRHKSQTDVRETQTRTPEIDRSLSKIQKSAYSNISELSEDRNRDSSGTSNDSMSGISDFSGPLSFKSIETSFESPDFSLTSSETSTRSFVSSNTPPSIESEMRKLRFELKQTMEMYDSASKEAVVAKQKANELQQLKMDMEEDRKIERGKSAEEVLRALAEFEKQKNKAATEAALMAQKLAELENQKKRIVTEEKARIEAEERKKTMELFERSNICYRRYSIDEIEAATDHFNESNKIGEGGYGPVYQALLDHTPVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPPMPWRTRFRIASDIATALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGKFPQILDPAITDWPIEDTLGLAQLALKCCELRKRDRPDLRTVLLPELVRLKNLGSGEMPPKGKLPNVGKARDQRASNSVPILNGSESEEGMRNNPNLPMEIQRRSIWQRLKVSTRFWSQKGIGLNTVSPQIKKKWSWNNSDAKVLNIPLPMSGKQVDVLSKKQQSSERCWSLVGCASAATMGFSLRVWVRLSCAALYVWFDPLSLSLSDLERIERNPKLRTRISTMADHSSNRDTDSGFDHGSPQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCIAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTGKQMLKRPRVTLQKPNSLHKNFPLSLAALCPTLASNSTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVVIEELPANVADLL | 1499 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 688045 | 701557 | - | ClCG09G000810.2 | Cla09g00073 | 279493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00073 | 1499 | Pfam | Protein kinase domain | 408 | 666 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla09g00073 | 1499 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1195 | 1480 | IPR027417 | - | |
Cla09g00073 | 1499 | SMART | helicmild6 | 1379 | 1460 | IPR001650 | - | |
Cla09g00073 | 1499 | Pfam | DEAD/DEAH box helicase | 1151 | 1312 | IPR011545 | GO:0003676|GO:0005524 | |
Cla09g00073 | 1499 | ProSiteProfiles | Protein kinase domain profile. | 408 | 672 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla09g00073 | 1499 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 526 | 538 | IPR008271 | GO:0004672|GO:0006468 | |
Cla09g00073 | 1499 | SMART | ultradead3 | 1145 | 1342 | IPR014001 | - | |
Cla09g00073 | 1499 | Pfam | Universal stress protein family | 26 | 141 | IPR006016 | - | |
Cla09g00073 | 1499 | CDD | DEADc_EIF4A | 1131 | 1328 | - | - | |
Cla09g00073 | 1499 | Gene3D | Transferase(Phosphotransferase) domain 1 | 481 | 677 | - | - | |
Cla09g00073 | 1499 | Gene3D | - | 1116 | 1334 | IPR027417 | - | |
Cla09g00073 | 1499 | MobiDBLite | consensus disorder prediction | 851 | 870 | - | - | |
Cla09g00073 | 1499 | Gene3D | Phosphorylase Kinase; domain 1 | 376 | 480 | - | - | |
Cla09g00073 | 1499 | Pfam | Tim17/Tim22/Tim23/Pmp24 family | 913 | 1022 | - | - | |
Cla09g00073 | 1499 | MobiDBLite | consensus disorder prediction | 252 | 273 | - | - | |
Cla09g00073 | 1499 | SMART | serkin_6 | 408 | 672 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla09g00073 | 1499 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 1126 | 1154 | IPR014014 | GO:0003724 | |
Cla09g00073 | 1499 | PANTHER | OS02G0152300 PROTEIN | 24 | 684 | - | - | |
Cla09g00073 | 1499 | MobiDBLite | consensus disorder prediction | 181 | 198 | - | - | |
Cla09g00073 | 1499 | MobiDBLite | consensus disorder prediction | 174 | 232 | - | - | |
Cla09g00073 | 1499 | Gene3D | - | 1335 | 1499 | IPR027417 | - | |
Cla09g00073 | 1499 | SUPERFAMILY | Protein kinase-like (PK-like) | 385 | 667 | IPR011009 | - | |
Cla09g00073 | 1499 | CDD | STK_N | 25 | 168 | - | - | |
Cla09g00073 | 1499 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1338 | 1499 | IPR001650 | - | |
Cla09g00073 | 1499 | Coils | Coil | 328 | 379 | - | - | |
Cla09g00073 | 1499 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 1273 | 1281 | IPR000629 | - | |
Cla09g00073 | 1499 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 26 | 165 | - | - | |
Cla09g00073 | 1499 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1157 | 1327 | IPR014001 | - | |
Cla09g00073 | 1499 | Gene3D | HUPs | 11 | 166 | IPR014729 | - | |
Cla09g00073 | 1499 | Coils | Coil | 278 | 322 | - | - | |
Cla09g00073 | 1499 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 24 | 684 | - | - | |
Cla09g00073 | 1499 | CDD | SF2_C_DEAD | 1339 | 1469 | - | - | |
Cla09g00073 | 1499 | Pfam | Helicase conserved C-terminal domain | 1352 | 1460 | IPR001650 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01330 | Cla-Chr8:26169949 | Cla09g00073 | Cla-Chr9:688045 | 1.43E-62 | dispersed | |
Cla01g00806 | Cla-Chr1:9464884 | Cla09g00073 | Cla-Chr9:688045 | 1.17E-45 | transposed | |
Cla01g01643 | Cla-Chr1:31265172 | Cla09g00073 | Cla-Chr9:688045 | 3.43E-12 | transposed | |
Cla02g00462 | Cla-Chr2:4479828 | Cla09g00073 | Cla-Chr9:688045 | 0 | transposed | |
Cla05g02642 | Cla-Chr5:37623867 | Cla09g00073 | Cla-Chr9:688045 | 2.77E-28 | transposed | |
Cla06g00914 | Cla-Chr6:15144866 | Cla09g00073 | Cla-Chr9:688045 | 5.99E-54 | transposed | |
Cla08g01004 | Cla-Chr8:22789988 | Cla09g00073 | Cla-Chr9:688045 | 0 | transposed | |
Cla08g01256 | Cla-Chr8:25473806 | Cla09g00073 | Cla-Chr9:688045 | 0 | transposed | |
Cla10g01132 | Cla-Chr10:25806437 | Cla09g00073 | Cla-Chr9:688045 | 1.78E-171 | transposed | |
Cla10g01864 | Cla-Chr10:34554306 | Cla09g00073 | Cla-Chr9:688045 | 4.51E-62 | transposed | |
Cla11g01104 | Cla-Chr11:22448886 | Cla09g00073 | Cla-Chr9:688045 | 2.35E-19 | transposed | |
Cla11g00152 | Cla-Chr11:1806239 | Cla09g00073 | Cla-Chr9:688045 | 6.65E-134 | wgd | |
Cla07g01320 | Cla-Chr7:30378278 | Cla09g00073 | Cla-Chr9:688045 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80779 | PF00069 | Pkinase | 1.50E-41 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00073 | K03257 | - | bhj:120085014 | 1406.73 |