Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00078 ATGGATGGAGGTGGCTTAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCATCATCAAAGCCCTCACCGCAGTTTTATCATTGCAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGGTACATGCCTGTTTCTCTGTTTGCCTCTTTTTGTCTTATGAGCTACAAATTTACTATTTTAGAAATCCCTTCTTACCTATGTATATTTGTTATTTGGCGCTTACAGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGCTTAGGCATTTCCCCCCGCATCTACATATAGTAAAAGAACGGAGCTGGGACAATGATATTAGTTTTGATAATGTTTACTGCTCTGCTGGGGACGGTCTCCAATTTTCAAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 984 41.46 MDGGGLVHNRSVEDVFSDFRGRRNGIIKALTAVLSLQMLKSSINNVILVHACFSVCLFLSYELQIYYFRNPFLPMYICYLALTEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTLRHFPPHLHIVKERSWDNDISFDNVYCSAGDGLQFSREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 768976 774571 - ClCG09G000880.2 Cla09g00078 279498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00078 327 ProSiteProfiles Zinc finger PHD-type profile. 271 323 IPR019787 -
Cla09g00078 327 SUPERFAMILY FYVE/PHD zinc finger 263 325 IPR011011 -
Cla09g00078 327 Pfam PHD-finger 274 323 IPR019787 -
Cla09g00078 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 322 IPR013083 -
Cla09g00078 327 CDD PHD_AL_plant 273 323 IPR044104 -
Cla09g00078 327 Pfam Alfin 84 179 IPR021998 GO:0006355|GO:0042393
Cla09g00078 327 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 83 326 - -
Cla09g00078 327 ProSitePatterns Zinc finger PHD-type signature. 274 320 IPR019786 -
Cla09g00078 327 SMART PHD_3 273 321 IPR001965 -
Cla09g00078 327 PANTHER CPG BINDING PROTEIN 83 326 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00398 Cla-Chr7:4960689 Cla09g00078 Cla-Chr9:768976 1.19E-88 dispersed
Cla09g00078 Cla-Chr9:768976 Cla10g00714 Cla-Chr10:11292447 1.03E-86 dispersed
Cla11g00146 Cla-Chr11:1751974 Cla09g00078 Cla-Chr9:768976 1.85E-100 wgd
Cla03g01469 Cla-Chr3:30202335 Cla09g00078 Cla-Chr9:768976 1.17E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61646 PF12165 Alfin 3.70E-49 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00078 - - csv:101222322 435.261