Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01938 ATGACGAAAATGGGTTCAAGGGAAGGTGCTCTGCCTCGATCTAGTCAAATGGGAAACAGAGTATGCCCTTCGGTCTGGTCCAGATCTGCAAGTTCGGAAGGTTTTGAACACCAACAAACATCGTTTGGAGCCTTTTTGATTGAGTTATATTTCGGGGACTGGCTAGAGTTTAATAATTTATCCTCTTACGTTTGGAGGGAGAGGAAAGGAAAAGCTCGAGAGACTGATCCGACCGAAATTGAGTTGGGTTGGTTTACGGCATCGCAAACTCGAAATACATATTCACGGAACCACTTTTACTGCCGTACGTCACCGGAAAACCTACCGGGGCGCGGAGGCGAAGAATCAAAGATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATTTGCCAGAAGTACGACAAATATGACGTTGAAAAGCAGAGAGATCTCAATGTTTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTCGAAGCTGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCGCGGTTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTTAAAGGGCTATCAACCGAAGATCTTACCACCCGAAATGATTTGGTGCTTGCATTGCCAGAGAGGATTCAAGCTATACCAGATGGAACTGCGACTTCCACGAAGAATAATGGGGGTTGGACATCCTCAGCTTCGCGTGCTGAAATCAAATTTGACTCAGATGGGCGATTCGATGATGAGTACTTCCAACACACTGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAACATGGCACATGATATGAATGAGGAAATAGATAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAAGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTCTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA 1149 45.95 MTKMGSREGALPRSSQMGNRVCPSVWSRSASSEGFEHQQTSFGAFLIELYFGDWLEFNNLSSYVWRERKGKARETDPTEIELGWFTASQTRNTYSRNHFYCRTSPENLPGRGGEESKMSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPERIQAIPDGTATSTKNNGGWTSSASRAEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35222601 35229624 - ClCG10G020390.2 Cla10g01938 283597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01938 382 CDD SNARE_Qc 292 347 - -
Cla10g01938 382 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 287 349 IPR000727 -
Cla10g01938 382 PANTHER SYNTAXIN 118 378 IPR045242 -
Cla10g01938 382 ProSitePatterns Syntaxin / epimorphin family signature. 293 332 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla10g01938 382 MobiDBLite consensus disorder prediction 1 21 - -
Cla10g01938 382 SMART tSNARE_6 282 349 IPR000727 -
Cla10g01938 382 Pfam SNARE domain 324 373 IPR000727 -
Cla10g01938 382 Gene3D - 287 348 - -
Cla10g01938 382 Coils Coil 157 177 - -
Cla10g01938 382 Coils Coil 336 356 - -
Cla10g01938 382 PANTHER SYNTAXIN-73 118 378 - -
Cla10g01938 382 SUPERFAMILY SNARE fusion complex 280 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01938 Cla-Chr10:35222601 Cla02g02052 Cla-Chr2:35582092 9.71E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01938 K08506 - csv:101215905 496.508