Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01018 ATGCCGTCTTCCGGTGTTTCAGCCTTGGATTCAGAAGAAGAAGGCAGGTCGAATGTGGGTAAAACAAAGGAGAACCCCAGCTTCTTTGATATATATGGAACCGATGCCAAAGCTGAGATTCTTTTCAAAACTCCCGAGTCTAATTCAACTTTAAGTCTGCAAGATGTTCAAGGGCTTGTAACTTGGGTGCTTGCTGAAGGTTTCATGCCATCATGGGTTTTCATTAAGAATAAACCCCTGATCCCCAAAGTGGTTATGGTTTATCTCCCTGGCCTGGATGCTGCTCTGTACATGTCACAGACCAAGATACTTCCTACGTTTAAAAAATTATGCGGCAATCCGAGGGCAGTTTTAGCTCTTAGCTGTATATCAGATAGAATGCAAACAATTGATGCACTTTTGACATGTAAGGTGAAGAGAAAGAGGGATGCAAATAGTGTAGACTTAAAGAATAATTTGACGTCTGAACAAGAAAGATTTGGCCCTGAAAAAGAAACACCGATATCTATCAAACTCCCGAAGGAGTTACCTTTCCCTGTTACATATTATACGCTAACTGCAAAAGAACTGGAAGACAATGGCTATCCTTTCAATCAACCAGGTTTTATACATACACTTCCTGCTCCTATTGGATCTTCACCTTATGAAATGTTGGCGCTTGACTGTGAAATGTGTGTGACCTGTGAAGGGTTTGAGCTCACAAGAATAACCCTGGTGGATATGGAAGGACAGGTTGTCCTTGACAAATTGGTAAAACCATCAAATGCAATTGTTGATTACAATACGAGGTTTAGTGGAATTACATTTGAGATGTTAAGTCAGGTGACCACTAGTCTGGAAGATGTTCAGAAAGTTTTTTTGAATCTAGTTCACAAGGAGACCGTTCTAATTGGTCATTCACTGGAGAATGACCTGATGGCATTAAAGATCTCTCATGATCTGGTGATTGATACTGCAGTACTGTATAAGCATCCCCGTGGCGGCTCTCATAAATCTGCCCTTCGAATCCTTACCAAAAAATTTCTTTCCAGGGAGATACAACAATCTGGCAATGGCCATGATAGTATTGAAGATGCAAGAGCTACTATGGAACTTGCACTTCTTAAAATTAAACATGGACCCGAGTTTGGTTCACCTCCATCATTAATCAGGAAAAAACTACTTACTATACTTGGTGAGAATGGAAAGACGTCTTCTTTCATCGATGATGTTTCAACAGTGAAGCGATATTCCTCAGAATCATCGCATGCATTTCCTGTAACTTCTGATGATGAAGCTCTTTCCAGGGCGAAAAAAGAGGTAATGAATGAAAGAGTACACTTCATATGGACACAATTTTCGGAATTGAATTCTTACCATAAGAAGCAAGTAGATGATGAAGAAAGATTGAATGTCAAGCTTGCAGAGTTATTGTCATTACTTACATGTGATTCAAAATCTGTAAACAAGAAAAGGAACAGCCGCAAAATCTCTGTTGAACTACGGGAAATTTTGAGCCGCATGGATTCCAGAATCAAGGACCTTTATACCTCGTTACCTACTAATGCTATGCTTATTGTTTGCACTGGTCACGGTGACATAGCACTTGTACAGAGATTGAGGAAAATGCTAAAGGAGCAAAGTGAAACAATGATATCCCGTGAGAAGATTGTCAAAATCTTGGAAGACCTCCATGCCCAAGCTGAAGTAGCTCTCTGTTTTGCTTCTATAAAGCATTCATCAGTACTCTAA 1731 39.98 MPSSGVSALDSEEEGRSNVGKTKENPSFFDIYGTDAKAEILFKTPESNSTLSLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQTKILPTFKKLCGNPRAVLALSCISDRMQTIDALLTCKVKRKRDANSVDLKNNLTSEQERFGPEKETPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQPGFIHTLPAPIGSSPYEMLALDCEMCVTCEGFELTRITLVDMEGQVVLDKLVKPSNAIVDYNTRFSGITFEMLSQVTTSLEDVQKVFLNLVHKETVLIGHSLENDLMALKISHDLVIDTAVLYKHPRGGSHKSALRILTKKFLSREIQQSGNGHDSIEDARATMELALLKIKHGPEFGSPPSLIRKKLLTILGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEALSRAKKEVMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSVNKKRNSRKISVELREILSRMDSRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMISREKIVKILEDLHAQAEVALCFASIKHSSVL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7469123 7480029 - CmaCh01G010180.1 Cma01g01018 286711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01018 576 Pfam Exonuclease 219 365 IPR013520 -
Cma01g01018 576 Gene3D - 214 375 IPR036397 GO:0003676
Cma01g01018 576 SMART exoiiiendus 216 375 IPR013520 -
Cma01g01018 576 MobiDBLite consensus disorder prediction 1 22 - -
Cma01g01018 576 PANTHER LD29573P 20 556 - -
Cma01g01018 576 CDD REX1_like 218 367 IPR034922 -
Cma01g01018 576 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 20 556 - -
Cma01g01018 576 SUPERFAMILY Ribonuclease H-like 217 370 IPR012337 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01018 Cma05g00312 CCT
Cma01g01018 Cma12g00404 CCT
Cma01g01018 Cma12g00404 ECH
Cma01g01018 Cma05g00312 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01018 Cma-Chr1:7469123 Cma03g00956 Cma-Chr3:6815832 3.92E-29 dispersed
Cma01g01018 Cma-Chr1:7469123 Cma09g01070 Cma-Chr9:5623123 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01018 K14570 - csv:101215617 1010.36