Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01495 ATGCAGGAACGAACCACCGCCGTCGCCTCCGCCAGTCGTACGCGATCGAGCAGCGAAAGATCGTCGAGTTCCGCGTTTCTACTTGATGTTAAAGAAGATATAGGAGTGGGGAGTGATGAGGAGGAGATTAGCAGAGTGCCGCAGATCTGCGGAAACTCTGCCTCTGCTGCCGGCGGCACTTCAGCATCTGGCAAAGCCCCTGCATCAGATGGCGTAAGGAGCAGAGGACGAAGCTCCGCTGACAAAGAAAGTAAAAGGCTGAAGAGATTGTTAAGAAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAAAAGGCGTATTTGGGCGACTTGGAAATAAGAGCAGCAAACTTGTTGAAAAGAAACTCCGAGCTTGAAGAGAATCTGTCCACGTTACAAAATGAGAATCAGATGCTTAGACACATACTAAAGAACACAACAACCAACAAGAGAAGTGATGGGGACACTGCTAATGCAAACCAGACTGTATAG 492 48.78 MQERTTAVASASRTRSSSERSSSSAFLLDVKEDIGVGSDEEEISRVPQICGNSASAAGGTSASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10499105 10502265 + CmaCh01G014950.1 Cma01g01495 287188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01495 163 Coils Coil 108 142 - -
Cma01g01495 163 CDD bZIP_HY5-like 86 137 - -
Cma01g01495 163 Gene3D Single helix bin 104 145 - -
Cma01g01495 163 MobiDBLite consensus disorder prediction 1 25 - -
Cma01g01495 163 Coils Coil 80 100 - -
Cma01g01495 163 MobiDBLite consensus disorder prediction 75 103 - -
Cma01g01495 163 Pfam bZIP transcription factor 82 142 IPR004827 GO:0003700|GO:0006355
Cma01g01495 163 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 152 IPR044280 GO:0000981|GO:0045944
Cma01g01495 163 MobiDBLite consensus disorder prediction 48 62 - -
Cma01g01495 163 Coils Coil 160 163 - -
Cma01g01495 163 SMART brlzneu 81 145 IPR004827 GO:0003700|GO:0006355
Cma01g01495 163 SUPERFAMILY Leucine zipper domain 85 143 IPR046347 GO:0003700|GO:0006355
Cma01g01495 163 MobiDBLite consensus disorder prediction 38 103 - -
Cma01g01495 163 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 83 146 IPR004827 GO:0003700|GO:0006355
Cma01g01495 163 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 152 - -
Cma01g01495 163 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 88 103 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01495 Cma12g00329 CCT
Cma01g01495 Cma05g00390 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01495 Cma-Chr1:10499105 Cma12g00329 Cma-Chr12:1688568 1.50E-48 dispersed
Cma01g01495 Cma-Chr1:10499105 Cma05g00390 Cma-Chr5:1712978 1.31E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34344 PF00170 bZIP_1 1.00E-11 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01495 K16241 - csv:101205952 217.238