Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01606 | ATGGATAGGCTCTGTTGTTTTAATGCTTCATACTCTCGGATTAGATCGGCTTTAAACTACGGTAAAGGAAGAAGCCACGAGGGGCTTATCAAGTACGGGTTCTGCCTGGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAACTGGGGCTCTTTGCCATTTACGATGGCCATTTAGGAGAAAATGTGCCTGCCTATTTACAAAAGCATTTGTTTTCTAATATCCTGAAGGAGGACGAGTTTTGGGTCGATCCCAACAGCTCCATCTCGAAAGCCTATGAGAAGACAGACCAAGCAATTCTATCTCACAGCTCCGACTTGGGTCGTGGTGGATCAACTGCGGTTAATGCTATTCTGATTAACGGTCGACGATTATGGGTGGCCAATGTTGGAGATTCTCGTGCAGTTCTATCAAGAGGGGGTGAAGCTATACAGATGAGCATCGACCATGAGCCAAGTACGGAGCGTGGCATCATTGAGAATAAAGGGGGTTTCGTTTCGAACATGCCAGGAGACGTACCTCGAGTGAATGGTCAGCTAGCAGTGTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCGGATCCCGATATACATGATATCAACATAGATGCCAACATGGATGTATTAATTCTTGCCAGCGATGGTCTATGGAAGGTAATGGCCAATCAAGAAGCGGTCGATATCGCTCGAAGAATCAAAGACCCATTGAAGGCTGCTAAGCAGTTGATAACTGAGGCTTTGCAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTGA | 840 | 44.76 | MDRLCCFNASYSRIRSALNYGKGRSHEGLIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGENVPAYLQKHLFSNILKEDEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVNAILINGRRLWVANVGDSRAVLSRGGEAIQMSIDHEPSTERGIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIHDINIDANMDVLILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALQKESKDDISCIVVRFR | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11067033 | 11070018 | + | CmaCh01G016060.1 | Cma01g01606 | 287299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01606 | 279 | ProSiteProfiles | PPM-type phosphatase domain profile. | 31 | 278 | IPR001932 | - | |
Cma01g01606 | 279 | Pfam | Protein phosphatase 2C | 40 | 271 | IPR001932 | - | |
Cma01g01606 | 279 | Gene3D | - | 26 | 279 | IPR036457 | - | |
Cma01g01606 | 279 | PANTHER | PROTEIN PHOSPHATASE 2C | 10 | 278 | IPR015655 | GO:0004722|GO:0006470 | |
Cma01g01606 | 279 | SMART | PP2C_4 | 23 | 276 | IPR001932 | - | |
Cma01g01606 | 279 | CDD | PP2Cc | 30 | 278 | IPR001932 | - | |
Cma01g01606 | 279 | PANTHER | PROTEIN PHOSPHATASE 2C 10-RELATED | 10 | 278 | - | - | |
Cma01g01606 | 279 | SUPERFAMILY | PP2C-like | 26 | 278 | IPR036457 | - | |
Cma01g01606 | 279 | SMART | PP2C_SIG_2 | 42 | 278 | IPR001932 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01606 | Cma09g00557 | CCT | |
Cma01g01606 | Cma09g00372 | CCT | |
Cma01g01606 | Cma09g00557 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01606 | Cma-Chr1:11067033 | Cma04g00396 | Cma-Chr4:2012083 | 2.68E-157 | dispersed | |
Cma11g01913 | Cma-Chr11:12647339 | Cma01g01606 | Cma-Chr1:11067033 | 1.82E-113 | transposed | |
Cma01g01606 | Cma-Chr1:11067033 | Cma09g00557 | Cma-Chr9:2534104 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01606 | K17506 | - | csv:101213414 | 529.25 |