Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01606 ATGGATAGGCTCTGTTGTTTTAATGCTTCATACTCTCGGATTAGATCGGCTTTAAACTACGGTAAAGGAAGAAGCCACGAGGGGCTTATCAAGTACGGGTTCTGCCTGGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAACTGGGGCTCTTTGCCATTTACGATGGCCATTTAGGAGAAAATGTGCCTGCCTATTTACAAAAGCATTTGTTTTCTAATATCCTGAAGGAGGACGAGTTTTGGGTCGATCCCAACAGCTCCATCTCGAAAGCCTATGAGAAGACAGACCAAGCAATTCTATCTCACAGCTCCGACTTGGGTCGTGGTGGATCAACTGCGGTTAATGCTATTCTGATTAACGGTCGACGATTATGGGTGGCCAATGTTGGAGATTCTCGTGCAGTTCTATCAAGAGGGGGTGAAGCTATACAGATGAGCATCGACCATGAGCCAAGTACGGAGCGTGGCATCATTGAGAATAAAGGGGGTTTCGTTTCGAACATGCCAGGAGACGTACCTCGAGTGAATGGTCAGCTAGCAGTGTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCGGATCCCGATATACATGATATCAACATAGATGCCAACATGGATGTATTAATTCTTGCCAGCGATGGTCTATGGAAGGTAATGGCCAATCAAGAAGCGGTCGATATCGCTCGAAGAATCAAAGACCCATTGAAGGCTGCTAAGCAGTTGATAACTGAGGCTTTGCAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTGA 840 44.76 MDRLCCFNASYSRIRSALNYGKGRSHEGLIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGENVPAYLQKHLFSNILKEDEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVNAILINGRRLWVANVGDSRAVLSRGGEAIQMSIDHEPSTERGIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIHDINIDANMDVLILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALQKESKDDISCIVVRFR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11067033 11070018 + CmaCh01G016060.1 Cma01g01606 287299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01606 279 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Cma01g01606 279 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Cma01g01606 279 Gene3D - 26 279 IPR036457 -
Cma01g01606 279 PANTHER PROTEIN PHOSPHATASE 2C 10 278 IPR015655 GO:0004722|GO:0006470
Cma01g01606 279 SMART PP2C_4 23 276 IPR001932 -
Cma01g01606 279 CDD PP2Cc 30 278 IPR001932 -
Cma01g01606 279 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 10 278 - -
Cma01g01606 279 SUPERFAMILY PP2C-like 26 278 IPR036457 -
Cma01g01606 279 SMART PP2C_SIG_2 42 278 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01606 Cma09g00557 CCT
Cma01g01606 Cma09g00372 CCT
Cma01g01606 Cma09g00557 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01606 Cma-Chr1:11067033 Cma04g00396 Cma-Chr4:2012083 2.68E-157 dispersed
Cma11g01913 Cma-Chr11:12647339 Cma01g01606 Cma-Chr1:11067033 1.82E-113 transposed
Cma01g01606 Cma-Chr1:11067033 Cma09g00557 Cma-Chr9:2534104 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01606 K17506 - csv:101213414 529.25