Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01813 ATGTCTGCTGATTATAAGCACCAGAGGCTCCCAAATCAGAAGCATAAACCTCACCCCAACAAAACATGCGAAGAAATGAGGCACTATACGATGGCGAGACGGCATTGTTACCCAATATCCATTCTACATTCATCAAGTTCAGGTCACCAAGACGCTTCATTTCTTCTTGATTCCCTGTTTTGCTTGGAGGAAGAGATTGGGGATGGCCTTATCCAACCAAAGGACCAAACTTTCTTAATGAATGTTTGTGTCAATTCCCCAAATTCTGTCTTCTTGTCGGAGAGGGAAGACGAGGAATTGGTGTCTCTGTTCTCTAAGGAGAACAAAAATGAGTTTCTTCGTAACACTCTCTCACACAATCCCTCTTTAGCAGCCGCTCGCTCCAAGGCTGTGGCCTGGATTCTGAAGGTCAATGCCCATTACTCTTTCACTGCACTCACCGCCGTTTTGGCCGTTGATTATGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGGCCCATCTCACCGCCATTGCTTGTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCGCGTGCCCCTTCTTTTAGACCTCCAGGTGGAAGAAAATGAGTACTACTTTGAAGCTAAAACTATTAGAAAAATGGAGATTCTCGTTCTTTCTACGCTTGTTTGGAGAATGAATCCAGTGAACCCACATTCCTTTCTGGATTATATCGTAAGACGGCTCGGGTTCAGGGACAAGCTCTGTTCTGAATTCCTCTGTAGATGTGAACGATTACTTCTCTCTGTCATCTTAGATTCTAGATTTGTATGTTTTCTTCCATCAGTCATAGCAAGCGCCATTATTTTTCAAGTTATCAACGACATAGAACCAAATGCCGCCGCCAAATGCCACGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAGGTGGAGGACTGTTCGAGATTCATCTTAGAAGCATCATCGAAAGAACGACACAGAAAGGACTGTAAGAATAAACGAAGATTCAGTTTAATGGATGGTCAGAATCGGAATGTCGACTGTGCTGTGTCCTCGCCGAAGACATCAACCAAGAAGAGAAAAAATTGA 1095 44.02 MSADYKHQRLPNQKHKPHPNKTCEEMRHYTMARRHCYPISILHSSSSGHQDASFLLDSLFCLEEEIGDGLIQPKDQTFLMNVCVNSPNSVFLSEREDEELVSLFSKENKNEFLRNTLSHNPSLAAARSKAVAWILKVNAHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMAHLTAIACLSLAAKVEETRVPLLLDLQVEENEYYFEAKTIRKMEILVLSTLVWRMNPVNPHSFLDYIVRRLGFRDKLCSEFLCRCERLLLSVILDSRFVCFLPSVIASAIIFQVINDIEPNAAAKCHDQLLGILQIDKDKVEDCSRFILEASSKERHRKDCKNKRRFSLMDGQNRNVDCAVSSPKTSTKKRKN 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12047797 12049324 - CmaCh01G018130.1 Cma01g01813 287506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01813 364 Pfam Cyclin, N-terminal domain 113 227 IPR006671 -
Cma01g01813 364 Gene3D - 122 227 - -
Cma01g01813 364 SMART cyclin_7 132 220 IPR013763 -
Cma01g01813 364 SUPERFAMILY Cyclin-like 89 227 IPR036915 -
Cma01g01813 364 SMART Cyclin_C_2 229 341 IPR004367 -
Cma01g01813 364 SUPERFAMILY Cyclin-like 230 338 IPR036915 -
Cma01g01813 364 Gene3D - 228 316 - -
Cma01g01813 364 Pfam Cyclin, C-terminal domain 229 338 IPR004367 -
Cma01g01813 364 MobiDBLite consensus disorder prediction 1 21 - -
Cma01g01813 364 CDD CYCLIN 127 219 IPR013763 -
Cma01g01813 364 ProSitePatterns Cyclins signature. 127 158 IPR006671 -
Cma01g01813 364 PANTHER CYCLINS 71 333 IPR039361 -
Cma01g01813 364 PANTHER CYCLIN D3.1 PROTEIN 71 333 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01813 Cma05g00163 CCT
Cma01g01813 Cma12g00567 CCT
Cma01g01813 Cma05g00163 ECH
Cma01g01813 Cma12g00567 ECH
Cma01g01813 Cma09g00261 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01813 Cma-Chr1:12047797 Cma03g00834 Cma-Chr3:6287640 5.24E-47 dispersed
Cma01g01813 Cma-Chr1:12047797 Cma11g01728 Cma-Chr11:11487243 2.21E-70 wgd
Cma01g01813 Cma-Chr1:12047797 Cma12g00567 Cma-Chr12:2965391 1.23E-87 wgd
Cma01g01813 Cma-Chr1:12047797 Cma16g00347 Cma-Chr16:1632612 4.27E-87 wgd
Cma01g01813 Cma-Chr1:12047797 Cma19g00585 Cma-Chr19:6507822 1.53E-71 wgd
Cma01g01813 Cma-Chr1:12047797 Cma04g00476 Cma-Chr4:2429635 1.83E-74 wgd
Cma01g01813 Cma-Chr1:12047797 Cma05g00163 Cma-Chr5:698112 1.17E-95 wgd
Cma01g01813 Cma-Chr1:12047797 Cma07g00683 Cma-Chr7:3002281 2.89E-77 wgd
Cma01g01813 Cma-Chr1:12047797 Cma09g00261 Cma-Chr9:1092895 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01813 K14505 - csv:101218302 480.33