Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01939 ATGACGGGGTTGTTATATTTAGGTGGTAAACAAGAGGATGATCAAGAACAAAGAGGAAGAGAGCAGCAATTGTTTTTGTACAATAGTAGAAACAACGAGGAGATCTACTCCAAGGGGTTGGAGATATGGCCACAATATGGGCAGCAGCATCAAGCGGTGGAGAATTACATTTCCTTTGGAGTGGGGCCGAGTAGGATGAACTTGATGATCAACGCCTCTGATCATGAGTTTACGATGATGAGACAAGGAGCTGCTACTGGCGGCGGTGGAGGTGGGATTAATTGCCAAGATTGTGGGAATCAAGCTAAGAAAGACTGCTCCCATTTGAGATGTCGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGTCAAACCCATGTTAAGAGTACTTGGGTTCCGGCTGCCAAGCGTCGGGAACGACAACAACAACGACAACAACAATTTCGACCAGATCAGTTTGATCAAACCACTCACAAATGCCATCGAGAAACTCAACCTTCTATTCCCCCTGCCACGGTCACCTCAGGGTTAGAACTTGCACATTTTCCAGCTGAATTCAACTCCCCAGCTGTTTTCCGCTGTGTCAAAGTCAGTGCCATTGACAATGTAGAAGAGCAATTAGCATATCAAACAGCTGTGAACATTGGTGGCCATATGTTCAAAGGCATTCTCTACGACCACGGTCCCGAAACCAGCCAGAATTTAAGCACCGGTGGTGAGAGCTCGTATAGCCATGGCGGGGATGACGACGGGCAAGGCTTGGATCTGGTGATCGGAGCGTCCAACAGCTTCGGGAGAGTTAACCCATCCGCCTCATTCGTGGAGTCTTCACTATATCCTATCCCGATCAACACGTTCACCCCGGGTATGCAAAATTTCCCTTCCTCAAGAACATAA 894 47.87 MTGLLYLGGKQEDDQEQRGREQQLFLYNSRNNEEIYSKGLEIWPQYGQQHQAVENYISFGVGPSRMNLMINASDHEFTMMRQGAATGGGGGGINCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQRQQQFRPDQFDQTTHKCHRETQPSIPPATVTSGLELAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDHGPETSQNLSTGGESSYSHGGDDDGQGLDLVIGASNSFGRVNPSASFVESSLYPIPINTFTPGMQNFPSSRT 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12590607 12592045 - CmaCh01G019390.1 Cma01g01939 287632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01939 297 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 293 - -
Cma01g01939 297 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 94 136 IPR006510 -
Cma01g01939 297 MobiDBLite consensus disorder prediction 230 249 - -
Cma01g01939 297 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 180 228 IPR006511 -
Cma01g01939 297 MobiDBLite consensus disorder prediction 135 169 - -
Cma01g01939 297 Pfam Domain of unknown function (DUF702) 92 229 - -
Cma01g01939 297 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 293 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01939 Cma05g00281 CCT
Cma01g01939 Cma12g00430 CCT
Cma01g01939 Cma12g00430 ECH
Cma01g01939 Cma05g00281 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01939 Cma-Chr1:12590607 Cma04g00769 Cma-Chr4:3906567 3.71E-57 dispersed
Cma19g00283 Cma-Chr19:2141068 Cma01g01939 Cma-Chr1:12590607 2.82E-121 transposed
Cma01g01939 Cma-Chr1:12590607 Cma12g00430 Cma-Chr12:2242402 9.81E-85 wgd
Cma01g01939 Cma-Chr1:12590607 Cma03g00708 Cma-Chr3:5754845 7.42E-62 wgd
Cma01g01939 Cma-Chr1:12590607 Cma05g00281 Cma-Chr5:1203604 6.90E-93 wgd
Cma01g01939 Cma-Chr1:12590607 Cma07g00452 Cma-Chr7:1973447 1.25E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34381 PF05142 DUF702 8.30E-60 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01939 - - csv:101220654 384.8