Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01443 ATGGATTTACAGAAGCATTTTCATGGTGGGTTTTCCTTATTCTCTCTGATTTTGCTGCTGATTTTTCCTTCTTACGTGTTGGGTGGGGATATTGTTCATCATGACGATTTGTCTCCCAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGTTAAAGTTCAAACTTGGATCGATGGCATAGAAGCCAGTGAATTTGTGGGTGTTGGAGCTAGATTTGGTGCTACCATCGTTTCAAAGGAGAAAAATGCAAACCAAACACGCCTTGTTCTTGCCAATCCCCGTGATTGCTGCAGTGTGCCAAAGGACAAGCTTTCTGGAGATATAATCATGGTTGATCGAGGTCACTGCAAATTTACTACAAAAGCAAATATTGCTGAAGCTGCTGGTGCTTCAGCTATACTGATAGTAAATAACCAAAAAGACCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTAGATATACATATACCTGCTGTCATGCTCCCTCACGATGCTGGTACAAGCTTGGAGAAGATGCTAATTAGTAATTCTTCAGTGTCTGTTCAGCTATACTCACCACAACGACCACCAGTTGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCGGTACAATCTTGTGTTCATCATTTTGGTCTGCCTGGAGTGCTAGAGAAGCAGCTATTGAGCAGGACAAGCTACTAAAGGATGGTGCAGATGATATTCAAAATGCTGATGAAATGGACAGCCCTGGTGTTGTATATATCAACATGGCATCAGCAGTCCTGTTTGTCATTGTTGCGTCGTGCTTTTTGATTGTGCTTTACAAACTCATGTCGTACTGGTTCATCGAGCTTTTGGTAGTCCTTTTCTGCATAGGAGGCGCAGAGGGCTTGCAAACTTGTTTGGTCGCGGTATTGTCGAGATGCTTTAAGGAAATTGGAGAACCATACATCAAAGTGCCATTCTTTGGAGCTGTTTCATACCTCAGTATGGCGGTTTCTCCATTCTGCGTAGCTTTTGCTGTCGTTTGGGCTATCTATCGGAGTGCGTCGTTTGCCTGGATTGGTCAAGACATACTTGGAATTGCACTGATAATTACAGTTCTTCAAATAGTTCGTATACCGAATCTCAAGGTTGGAACAGTGCTTCTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAAGGAAAGTGTGATGATTGTGGTGGCTCGTGGCGACAAAAGCGGAGAGGACGGTATCCCGATGCTGCTAAAGATCCCACGCATGTTCGATCCGTGGGGTGGTTATAGCATCATTGGATTTGGTGACATTCTTTTACCTGGACTTATAGTAGCGTTTTCTCTCAGGTATGACTGGTTGGCGAATAAGAGCCTCCGGGCTGGTTACTTCTTACCAGCAATGCTTGCTTATGGATCAGGTCTTCTGATTACCTATGTAGCTTTGAACCTGATGGACGGCCACGGCCAGCCCGCCCTGCTTTATATCGTCCCGTTCACTCTCGGAACCCTTTTGATACTGGGGAAGAAGAGAGGAGATTTGGGGATTTTATGGAGAAAAGGAGAACCAGAAAGGAAGCCTCATACAGTCTCACAGCTCACTCCCAAAAGAAGAACAAAAATGGAGGGCAAAGAAGAGGACGTCAAGCTCGGAGCCAACAAGTACTCAGAGAGACAACCCATCGGCACATCGGCGCAGACGGACAAGGACTACAAAGAACCCCCACCGGCGCCACTCTTCGAGCCCGGCGAGCTGTCCTCATGGTCCTTCTACAGAGCCGGAATCGCCGAGTTCGTAGCCACTTTCTTGTTCCTCTACATCACCATTTTGACGGTGATGGGAGTCAGCCGAGCTCCAACCAAGTGCTCCACCGTCGGCATTCAGGGCATCGCTTGGGCCTTCGGCGGCATGATCTTTGCTCTTGTTTACTGCACCGCTGGCATCTCCGGTGGACACATTAATCCGGCGGTGACGTTCGGGCTTTTCTTGGCGAGGAAGCTGTCGCTCACCAGAGCCATATTCTACATCATCATGCAGTGTCTAGGTGCCATCTGCGGTGCCGGCGTCGTGAAGGGCTTCGAGAAGTCCATCTACGTGCAGAAGCTCGGCGGTGCCAACTTCGTGGCCTCTGGCTACACCAAGGGCAGTGGCCTTGGCGCTGAGATCATTGGCACCTTCGTTCTCGTCTACACTGTCTTCTCCGCCACCGATGCCAAGAGAAATGCCAGAGACTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCTGTGTTTTTGGTTCATTTGGCGACCATTCCCATCACCGGCACCGGCATCAACCCAGCCCGGAGTCTGGGAGCTGCCATCATCTACAACAGGCAGCACGCTTGGGATGACCATGTTAGTACAATGGATCTTCTGGGTGGGACCTTTCATCGGAGCTGCTCTTGCTGCTATTTACCACCAGATCATAATCAGAGCCATTCCATTCAAGGCCAGAGCTTGAAGACTCTACTACTTCCACTGAAACAGATAGGTCTAGTGGAAATCGAAATGTGTTCCTTTTCTATTCGCTCTTTGTTTGCTTATTTGGTCCTTCAGGACGACGACTGTCATGGATTTGTGTGTAAATTAAGTTTTCTATTATGTGTTGTAATGGAGAATTGTTCCCTTTTGCATCAATATCTACTACCACTTTGA 2694 47.29 MDLQKHFHGGFSLFSLILLLIFPSYVLGGDIVHHDDLSPKKPGCENDFILVKVQTWIDGIEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKDKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKDLYKMVCDPDETDLDIHIPAVMLPHDAGTSLEKMLISNSSVSVQLYSPQRPPVDIAEVFLWLMAVGTILCSSFWSAWSAREAAIEQDKLLKDGADDIQNADEMDSPGVVYINMASAVLFVIVASCFLIVLYKLMSYWFIELLVVLFCIGGAEGLQTCLVAVLSRCFKEIGEPYIKVPFFGAVSYLSMAVSPFCVAFAVVWAIYRSASFAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFKESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIVAFSLRYDWLANKSLRAGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLILGKKRGDLGILWRKGEPERKPHTVSQLTPKRRTKMEGKEEDVKLGANKYSERQPIGTSAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEKSIYVQKLGGANFVASGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHVSTMDLLGGTFHRSCSCCYLPPDHNQSHSIQGQSLKTLLLPLKQIGLVEIEMCSFSIRSLFAYLVLQDDDCHGFVCKLSFLLCVVMENCSLLHQYLLPL 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8301676 8308645 - CmaCh02G014430.1 Cma02g01443 289194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01443 897 Pfam PA domain 89 171 IPR003137 -
Cma02g01443 897 Pfam Signal peptide peptidase 249 525 IPR007369 GO:0004190|GO:0016021
Cma02g01443 897 Gene3D - 57 190 - -
Cma02g01443 897 MobiDBLite consensus disorder prediction 529 552 - -
Cma02g01443 897 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 12 534 - -
Cma02g01443 897 SUPERFAMILY PA domain 95 146 IPR046450 -
Cma02g01443 897 SMART psh_8 247 514 IPR006639 GO:0004190|GO:0016021
Cma02g01443 897 PRINTS Major intrinsic protein family signature 723 741 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01443 897 PRINTS Major intrinsic protein family signature 759 781 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01443 897 PRINTS Major intrinsic protein family signature 637 661 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01443 897 PRINTS Major intrinsic protein family signature 595 614 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01443 897 PRINTS Major intrinsic protein family signature 674 693 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01443 897 PANTHER SIGNAL PEPTIDE PEPTIDASE 12 534 IPR007369 GO:0004190|GO:0016021
Cma02g01443 897 TIGRFAM MIP: MIP family channel proteins 599 797 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01443 897 Pfam Major intrinsic protein 587 798 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma02g01443 897 ProSitePatterns MIP family signature. 655 663 IPR022357 -
Cma02g01443 897 Gene3D Glycerol uptake facilitator protein. 580 811 IPR023271 -
Cma02g01443 897 SUPERFAMILY Aquaporin-like 588 795 IPR023271 -
Cma02g01443 897 CDD MIP 595 798 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01443 Cma15g01234 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01443 Cma-Chr2:8301676 Cma17g00435 Cma-Chr17:2574258 0 dispersed
Cma08g00905 Cma-Chr8:5613224 Cma02g01443 Cma-Chr2:8301676 6.65E-67 dispersed
Cma15g01235 Cma-Chr15:7826897 Cma02g01443 Cma-Chr2:8301676 2.13E-177 transposed
Cma15g01234 Cma-Chr15:7815763 Cma02g01443 Cma-Chr2:8301676 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01443 K09597 - csv:101216966 972.23