Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00680 ATGGGGCTGTTCAGCTCTTTCCACCATTCTTCTCCCTTCTTCTCCACCTTGATTGTGCTTCTTCTTGTCAAAGGTCTCAAAGAGGTCTCCGGCGCTACGTTCACGTTCGTTAACAAGTGTGAATTCACCGTATGGCCGGGAATTCTCGCCAGTGCTGGCAGCCCGAAACTGGAATCCACGGGTTTCGAGCTCGTACAGGGTAGTTCTCGCTCTTTTCAAGCTCCGACCGCCTGGTCCGGTCGGTTCTGGGGCCGAACCAATTGCAATCTCGACGGCTCCGGCCGTATCATCTGCAACACTGGTGACTGCGGCTCCGGTGAGATTGAGTGTAATGGAGCTGGCGCCACCCCACCGGCCACGTTAGCCGAATTCACACTCGGTTCCGGGTCGCAGGATTTCTACGACGTCAGTCTCGTCGACGGCTATAACTTGCCGATGATAATTGAGGGAACTGGCGGGTCGGGCACGTGCTCGTCGACCGGCTGCATTACGGACCTGAATCAGCTCTGCCCGGCGGAGCTGAAGGCAGAGGGTGGCGGCGCGTGTAAAAGCGCCTGTGAGGCATTTGCCTCGCCGGAATACTGCTGCAGCGGAACGTATAACTCGCCGGCGACTTGCCGGCCGTCAGTATACTCAGAAATGTTCAAATCGGCGTGCCCCAGATCGTATAGCTACGCTTATGATGACGCCACAAGCACATTCACCTGTAATGGGGCTGATTACACCATCACATTTTGCCCTTCTCCCCCGAGTCAGAAATCTTCAAGGGATTCGTCGCCAATGATACCAGAGCCAACAACAGAGCAACCGGGATCAGAGCCAGAGACCAAGCCAGGATCAGAATCAGAATTGGGTTCATTACAAGGAGCAACATTAAGTAATTCTTGGCTTGCGGATATGGCCATAGGAGGCTCTTCCATGGCTGGAAAACCAAATTTAGCATTTCAATTTATGTCAAATTTGATATTCTTAGTCGTTATATATCTGGTTCTTCTTTTGGAATAA 1005 52.54 MGLFSSFHHSSPFFSTLIVLLLVKGLKEVSGATFTFVNKCEFTVWPGILASAGSPKLESTGFELVQGSSRSFQAPTAWSGRFWGRTNCNLDGSGRIICNTGDCGSGEIECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIIEGTGGSGTCSSTGCITDLNQLCPAELKAEGGGACKSACEAFASPEYCCSGTYNSPATCRPSVYSEMFKSACPRSYSYAYDDATSTFTCNGADYTITFCPSPPSQKSSRDSSPMIPEPTTEQPGSEPETKPGSESELGSLQGATLSNSWLADMAIGGSSMAGKPNLAFQFMSNLIFLVVIYLVLLLE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5628886 5630563 - CmaCh03G006800.1 Cma03g00680 290251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00680 334 CDD TLP-PA 33 246 - -
Cma03g00680 334 Gene3D Thaumatin 32 247 IPR037176 -
Cma03g00680 334 SUPERFAMILY Osmotin, thaumatin-like protein 32 248 IPR037176 -
Cma03g00680 334 Pfam Thaumatin family 38 247 IPR001938 -
Cma03g00680 334 PRINTS Pathogenesis-related protein signature 33 45 IPR001938 -
Cma03g00680 334 PRINTS Pathogenesis-related protein signature 81 92 IPR001938 -
Cma03g00680 334 PRINTS Pathogenesis-related protein signature 132 148 IPR001938 -
Cma03g00680 334 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cma03g00680 334 MobiDBLite consensus disorder prediction 248 285 - -
Cma03g00680 334 SMART tha2 34 247 IPR001938 -
Cma03g00680 334 PANTHER THAUMATIN-LIKE PROTEIN 1 22 267 - -
Cma03g00680 334 PANTHER OS03G0233200 PROTEIN 22 267 IPR001938 -
Cma03g00680 334 ProSiteProfiles Thaumatin family profile. 31 247 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00680 Cma16g01240 CCT
Cma03g00680 Cma20g00764 CCT
Cma03g00680 Cma20g00764 ECH
Cma03g00680 Cma16g01240 ECH
Cma03g00680 Cma07g00423 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00680 Cma-Chr3:5628886 Cma06g00575 Cma-Chr6:2769173 8.98E-132 dispersed
Cma20g00764 Cma-Chr20:3604467 Cma03g00680 Cma-Chr3:5628886 3.80E-99 dispersed
Cma01g01978 Cma-Chr1:12735370 Cma03g00680 Cma-Chr3:5628886 5.44E-97 wgd
Cma12g00403 Cma-Chr12:2089523 Cma03g00680 Cma-Chr3:5628886 2.61E-117 wgd
Cma16g01240 Cma-Chr16:9373372 Cma03g00680 Cma-Chr3:5628886 9.90E-96 wgd
Cma03g00680 Cma-Chr3:5628886 Cma05g00312 Cma-Chr5:1353680 1.37E-102 wgd
Cma03g00680 Cma-Chr3:5628886 Cma07g00422 Cma-Chr7:1812385 8.68E-177 wgd
Cma03g00680 Cma-Chr3:5628886 Cma09g00098 Cma-Chr9:437138 6.10E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00680 - - csv:101222295 503.442