Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00769 ATGGCCGCCGTCAATCTCCGACCAGACGACGACAATTCTACACTCATCTCCCACTTCTACAATCCTGAAATTTACACCCAAATGCTACCCCAACAAGGTACGGCAGAGGGAAACAAGCCGACGAAGAGACGGCGGAGGAGGAGCAGAGTGAAGGAGGTGGCCTCAACCGCCGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGAAACGAGCACAAATTGGAAACGGAGAGGAAAAATCGGTTGGCTTCAGAATTAGGCCTTGATCCAAGCCAAGTCGCCATCTGGTTTCAGAACCGCCGTGCGCGGTGGAAGAACCAGAAACTGGAACACCAATATTCCATTCTCAAAAAAGCTCACGATTCTGCTGTTCTCCAAAAAACCCATCTTCAATCTCAGATAGAGAAACTGAAACAGCAACTAGCGGAAGCGAAGAATGAGATACAGAAACTGGTGGAAGTACGCGAGATCAACCGGAGGTCGTCGGTGACGATGGATGACGTGCAAGCGGCGGCGTGTTGGGGAGAGATATTAATGGAAGAATATGAAGATGTATTCTGCTCTATGCAAGAGAACAATTATAATCAACCAGTGGAGTGGTACCTTAATTATAATTATATGTACACTAATTAA 657 46.73 MAAVNLRPDDDNSTLISHFYNPEIYTQMLPQQGTAEGNKPTKRRRRRSRVKEVASTAGLKKRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSILKKAHDSAVLQKTHLQSQIEKLKQQLAEAKNEIQKLVEVREINRRSSVTMDDVQAAACWGEILMEEYEDVFCSMQENNYNQPVEWYLNYNYMYTN 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5995766 5997148 - CmaCh03G007690.1 Cma03g00769 290340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00769 218 Coils Coil 128 162 - -
Cma03g00769 218 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Cma03g00769 218 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Cma03g00769 218 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Cma03g00769 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 211 IPR045224 GO:0003700
Cma03g00769 218 SUPERFAMILY Homeodomain-like 59 124 IPR009057 -
Cma03g00769 218 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Cma03g00769 218 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Cma03g00769 218 MobiDBLite consensus disorder prediction 29 54 - -
Cma03g00769 218 Gene3D - 52 122 - -
Cma03g00769 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 10 211 - -
Cma03g00769 218 CDD homeodomain 60 116 IPR001356 GO:0003677
Cma03g00769 218 SMART HOX_1 58 119 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00769 Cma07g00504 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00769 Cma-Chr3:5995766 Cma15g00329 Cma-Chr15:1521359 1.43E-25 dispersed
Cma03g00769 Cma-Chr3:5995766 Cma04g00773 Cma-Chr4:3938724 1.85E-44 wgd
Cma03g00769 Cma-Chr3:5995766 Cma07g00504 Cma-Chr7:2173580 1.75E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34644 PF00046 Homeodomain 1.50E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00769 K09338 - csv:101216890 306.219