Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01741 ATGAACCATCTCTTTGAACTTCCTGAAAAGATTTGCTATGTGCAATGTGGAATCTGTACCACCATTTTGCTGGTCAGTGTGCCGTGCAGCAGCTTGTCGATGGAGGTGACCGTGACGTGCGGCCACTGCTCAAGCCTCCTTTCTGTTAACATGCTGAGAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTCTATCTCGCAATCTGCCCAAAGAAACTTGTAGAGAAATGAGTTCAGGGAAGTTGTTTGACAGTTTCATAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGTCACACCTCCCTCTGTAAACAAACCTCCTGAGAAAAGACAGCGTGTCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAACCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCTGCAAAAAATTGGGCAAACTTCCCTCCAACAATCCAACAAAAAGAAGACCCACAGAACACTCAAATTCCAGAGATTCCGTTTCCGGCGCCGGCGTCCAAGGGGAAGTTGTTTAGCATTTCACAGAGGGGACTTAGTAGCAAATTGGGAGTTAAGTTCCATGGGGTTGCTGAAAATCCTACCGAGGCTATCGTCGAAGAAACAGGATTGCCTTCAGGTGTCACTCTTGGAAGTTGTACAGTTCTTGATGTTGCTGGAGATGGTGCTCTTCCACTGCTTTACAAAGTTCTGGAATCTGGCATCTCAAATGTCACAGAAACTACCAAACTCATATGGCTTCACTTGGGAGTCAATAGTGGTTCGACGAGGTTTGCTGTTGAATGGCAAGCTGTGAACGAAGCTACTTTTCGTTATCCAGACGAACTCGGATGGCAGCCTCAGAAACTTCCAATAGTCATGGAGGATGGGGAAATCTCAATGATTAGAAAGACATCCTGCTCGGCTCCGACGATCTTAGAGAGGTTGAAGGCGAAAAGCTACAATGTGATATTATCGGAGGATGCGGGTCGTTTTGTTTGCAATTATGTATATTACCATTCCCTCAGATTGGCAGAACAGAAGGGTCACAAATCCTTGTTTGTCCATGTTCCTCTGTTTTCAAAGATCAACAAAGAAACCCAGATGCGTTTTGTTCATTCACTTTTAGAAGCCATTGCGTCTACATGTTGA 1179 44.53 MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLHFLSSLSRNLPKETCREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRVPSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQNTQIPEIPFPAPASKGKLFSISQRGLSSKLGVKFHGVAENPTEAIVEETGLPSGVTLGSCTVLDVAGDGALPLLYKVLESGISNVTETTKLIWLHLGVNSGSTRFAVEWQAVNEATFRYPDELGWQPQKLPIVMEDGEISMIRKTSCSAPTILERLKAKSYNVILSEDAGRFVCNYVYYHSLRLAEQKGHKSLFVHVPLFSKINKETQMRFVHSLLEAIASTC 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8746724 8752040 - CmaCh04G017410.1 Cma04g01741 292822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01741 392 CDD HMG-box 119 165 - -
Cma04g01741 392 Gene3D - 201 392 IPR036440 -
Cma04g01741 392 PRINTS Pyroglutamyl peptidase I (C15) family signature 332 348 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cma04g01741 392 PRINTS Pyroglutamyl peptidase I (C15) family signature 360 372 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cma04g01741 392 PRINTS Pyroglutamyl peptidase I (C15) family signature 277 297 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cma04g01741 392 PANTHER BNAA09G15240D PROTEIN 202 391 - -
Cma04g01741 392 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 202 391 IPR016125 -
Cma04g01741 392 Pfam YABBY protein 8 160 IPR006780 GO:0007275
Cma04g01741 392 SUPERFAMILY HMG-box 105 164 IPR036910 -
Cma04g01741 392 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 202 390 IPR036440 -
Cma04g01741 392 Pfam Pyroglutamyl peptidase 240 371 IPR016125 -
Cma04g01741 392 Gene3D High mobility group box domain 108 171 IPR036910 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01741 Cma05g00022 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01741 Cma-Chr4:8746724 Cma18g00792 Cma-Chr18:6983258 2.54E-92 dispersed
Cma18g00791 Cma-Chr18:6980412 Cma04g01741 Cma-Chr4:8746724 1.02E-12 wgd
Cma04g01741 Cma-Chr4:8746724 Cma05g00022 Cma-Chr5:105423 1.49E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34902 PF01470 Peptidase_C15 3.30E-11 CL0379 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01741 K01304 - csv:105435561 344.354