Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01741 ATGAACCATCTCTTTGAACTTCCTGAAAAGATTTGCTATGTGCAATGTGGAATCTGTACCACCATTTTGCTGGTCAGTGTGCCGTGCAGCAGCTTGTCGATGGAGGTGACCGTGACGTGCGGCCACTGCTCAAGCCTCCTTTCTGTTAACATGCTGAGAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTCTATCTCGCAATCTGCCCAAAGAAACTTGTAGAGAAATGAGTTCAGGGAAGTTGTTTGACAGTTTCATAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGTCACACCTCCCTCTGTAAACAAACCTCCTGAGAAAAGACAGCGTGTCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAACCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCTGCAAAAAATTGGGCAAACTTCCCTCCAACAATCCAACAAAAAGAAGACCCACAGAACACTCAAATTCCAGAGATTCCGTTTCCGGCGCCGGCGTCCAAGGGGAAGTTGTTTAGCATTTCACAGAGGGGACTTAGTAGCAAATTGGGAGTTAAGTTCCATGGGGTTGCTGAAAATCCTACCGAGGCTATCGTCGAAGAAACAGGATTGCCTTCAGGTGTCACTCTTGGAAGTTGTACAGTTCTTGATGTTGCTGGAGATGGTGCTCTTCCACTGCTTTACAAAGTTCTGGAATCTGGCATCTCAAATGTCACAGAAACTACCAAACTCATATGGCTTCACTTGGGAGTCAATAGTGGTTCGACGAGGTTTGCTGTTGAATGGCAAGCTGTGAACGAAGCTACTTTTCGTTATCCAGACGAACTCGGATGGCAGCCTCAGAAACTTCCAATAGTCATGGAGGATGGGGAAATCTCAATGATTAGAAAGACATCCTGCTCGGCTCCGACGATCTTAGAGAGGTTGAAGGCGAAAAGCTACAATGTGATATTATCGGAGGATGCGGGTCGTTTTGTTTGCAATTATGTATATTACCATTCCCTCAGATTGGCAGAACAGAAGGGTCACAAATCCTTGTTTGTCCATGTTCCTCTGTTTTCAAAGATCAACAAAGAAACCCAGATGCGTTTTGTTCATTCACTTTTAGAAGCCATTGCGTCTACATGTTGA 1179 44.53 MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLHFLSSLSRNLPKETCREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRVPSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQNTQIPEIPFPAPASKGKLFSISQRGLSSKLGVKFHGVAENPTEAIVEETGLPSGVTLGSCTVLDVAGDGALPLLYKVLESGISNVTETTKLIWLHLGVNSGSTRFAVEWQAVNEATFRYPDELGWQPQKLPIVMEDGEISMIRKTSCSAPTILERLKAKSYNVILSEDAGRFVCNYVYYHSLRLAEQKGHKSLFVHVPLFSKINKETQMRFVHSLLEAIASTC 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8746724 8752040 - CmaCh04G017410.1 Cma04g01741 292822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01741 392 CDD HMG-box 119 165 - -
Cma04g01741 392 Gene3D - 201 392 IPR036440 -
Cma04g01741 392 PRINTS Pyroglutamyl peptidase I (C15) family signature 332 348 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cma04g01741 392 PRINTS Pyroglutamyl peptidase I (C15) family signature 360 372 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cma04g01741 392 PRINTS Pyroglutamyl peptidase I (C15) family signature 277 297 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cma04g01741 392 PANTHER BNAA09G15240D PROTEIN 202 391 - -
Cma04g01741 392 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 202 391 IPR016125 -
Cma04g01741 392 Pfam YABBY protein 8 160 IPR006780 GO:0007275
Cma04g01741 392 SUPERFAMILY HMG-box 105 164 IPR036910 -
Cma04g01741 392 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 202 390 IPR036440 -
Cma04g01741 392 Pfam Pyroglutamyl peptidase 240 371 IPR016125 -
Cma04g01741 392 Gene3D High mobility group box domain 108 171 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01741 K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] - csv:105435561 344.354
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01741 Cma05g00022 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01741 Cma-Chr4:8746724 Cma18g00792 Cma-Chr18:6983258 2.54E-92 dispersed
Cma18g00791 Cma-Chr18:6980412 Cma04g01741 Cma-Chr4:8746724 1.02E-12 wgd
Cma04g01741 Cma-Chr4:8746724 Cma05g00022 Cma-Chr5:105423 1.49E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g669 . . . . . . . . . . . . . . . . Cpe01g01541 Bhi07g01746 . . Lac13g0189 Hepe10g1628 . . Cla05g02553 Cam05g2741 Cec05g2773 Cco05g2813 Clacu05g2742 Cmu05g2594 Cre05g2709 . . . . Lsi04g00561 Csa05g02325 Chy10g00892 Cme10g00537 . Blo11g00921 . . . . . . . . . Cma04g01741 Cma05g00022 Car04g01775 Car05g00019 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01709 CCT 17 174 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 9.2e-44 174.1
Cma02g01557 . 71 231 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.9e-43 172.9
Cma15g01149 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 57.4 1.2e-42 170.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT1G08465 62.5 7.2e-52 201.1
Cma11g00536 . 40 214 C2C2-YABBY Transcription Factor Family AT1G08465 54.7 1.0e-42 170.6
Cma02g01557 . 27 219 C2C2-YABBY Transcription Factor Family AT1G08465 52.6 1.4e-42 170.2
Cma15g01149 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.8e-42 169.9
Cma10g00541 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.7e-37 153.3
Cma06g00763 CCT 19 187 C2C2-YABBY Transcription Factor Family AT1G08465 52.7 2.2e-37 152.9
Cma02g01557 . 38 230 C2C2-YABBY Transcription Factor Family AT4G00180 57.0 4.0e-51 198.7
Cma15g01149 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.0 2.0e-50 196.4
Cma04g01741 CST 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.0 2.1e-36 150.2
Cma11g00536 . 42 210 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.6e-63 238.4
Cma05g01287 . 8 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.4 4.4e-61 231.5
Cma12g01202 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 3.3e-56 215.3
Cma10g00541 . 7 165 C2C2-YABBY Transcription Factor Family AT2G26580 69.2 7.3e-56 214.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 2.3e-46 182.6
Cma15g01149 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.9e-44 175.6
Cma02g01557 . 29 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.2 5.4e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34902 PF01470 Peptidase_C15 3.30E-11 CL0379 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01741 Cma_Chr04 FPKM 5.111111 4.928676 4.400088 4.2573 3.844564 3.106152 3.042156 3.875569 4.386212 3.66228