Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01741 | ATGAACCATCTCTTTGAACTTCCTGAAAAGATTTGCTATGTGCAATGTGGAATCTGTACCACCATTTTGCTGGTCAGTGTGCCGTGCAGCAGCTTGTCGATGGAGGTGACCGTGACGTGCGGCCACTGCTCAAGCCTCCTTTCTGTTAACATGCTGAGAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTCTATCTCGCAATCTGCCCAAAGAAACTTGTAGAGAAATGAGTTCAGGGAAGTTGTTTGACAGTTTCATAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGTCACACCTCCCTCTGTAAACAAACCTCCTGAGAAAAGACAGCGTGTCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAACCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCTGCAAAAAATTGGGCAAACTTCCCTCCAACAATCCAACAAAAAGAAGACCCACAGAACACTCAAATTCCAGAGATTCCGTTTCCGGCGCCGGCGTCCAAGGGGAAGTTGTTTAGCATTTCACAGAGGGGACTTAGTAGCAAATTGGGAGTTAAGTTCCATGGGGTTGCTGAAAATCCTACCGAGGCTATCGTCGAAGAAACAGGATTGCCTTCAGGTGTCACTCTTGGAAGTTGTACAGTTCTTGATGTTGCTGGAGATGGTGCTCTTCCACTGCTTTACAAAGTTCTGGAATCTGGCATCTCAAATGTCACAGAAACTACCAAACTCATATGGCTTCACTTGGGAGTCAATAGTGGTTCGACGAGGTTTGCTGTTGAATGGCAAGCTGTGAACGAAGCTACTTTTCGTTATCCAGACGAACTCGGATGGCAGCCTCAGAAACTTCCAATAGTCATGGAGGATGGGGAAATCTCAATGATTAGAAAGACATCCTGCTCGGCTCCGACGATCTTAGAGAGGTTGAAGGCGAAAAGCTACAATGTGATATTATCGGAGGATGCGGGTCGTTTTGTTTGCAATTATGTATATTACCATTCCCTCAGATTGGCAGAACAGAAGGGTCACAAATCCTTGTTTGTCCATGTTCCTCTGTTTTCAAAGATCAACAAAGAAACCCAGATGCGTTTTGTTCATTCACTTTTAGAAGCCATTGCGTCTACATGTTGA | 1179 | 44.53 | MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLHFLSSLSRNLPKETCREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRVPSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQNTQIPEIPFPAPASKGKLFSISQRGLSSKLGVKFHGVAENPTEAIVEETGLPSGVTLGSCTVLDVAGDGALPLLYKVLESGISNVTETTKLIWLHLGVNSGSTRFAVEWQAVNEATFRYPDELGWQPQKLPIVMEDGEISMIRKTSCSAPTILERLKAKSYNVILSEDAGRFVCNYVYYHSLRLAEQKGHKSLFVHVPLFSKINKETQMRFVHSLLEAIASTC | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8746724 | 8752040 | - | CmaCh04G017410.1 | Cma04g01741 | 292822 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01741 | 392 | CDD | HMG-box | 119 | 165 | - | - | |
Cma04g01741 | 392 | Gene3D | - | 201 | 392 | IPR036440 | - | |
Cma04g01741 | 392 | PRINTS | Pyroglutamyl peptidase I (C15) family signature | 332 | 348 | IPR000816 | GO:0005829|GO:0006508|GO:0016920 | |
Cma04g01741 | 392 | PRINTS | Pyroglutamyl peptidase I (C15) family signature | 360 | 372 | IPR000816 | GO:0005829|GO:0006508|GO:0016920 | |
Cma04g01741 | 392 | PRINTS | Pyroglutamyl peptidase I (C15) family signature | 277 | 297 | IPR000816 | GO:0005829|GO:0006508|GO:0016920 | |
Cma04g01741 | 392 | PANTHER | BNAA09G15240D PROTEIN | 202 | 391 | - | - | |
Cma04g01741 | 392 | PANTHER | PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED | 202 | 391 | IPR016125 | - | |
Cma04g01741 | 392 | Pfam | YABBY protein | 8 | 160 | IPR006780 | GO:0007275 | |
Cma04g01741 | 392 | SUPERFAMILY | HMG-box | 105 | 164 | IPR036910 | - | |
Cma04g01741 | 392 | SUPERFAMILY | Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) | 202 | 390 | IPR036440 | - | |
Cma04g01741 | 392 | Pfam | Pyroglutamyl peptidase | 240 | 371 | IPR016125 | - | |
Cma04g01741 | 392 | Gene3D | High mobility group box domain | 108 | 171 | IPR036910 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g01741 | Cma05g00022 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01741 | Cma-Chr4:8746724 | Cma18g00792 | Cma-Chr18:6983258 | 2.54E-92 | dispersed | |
Cma18g00791 | Cma-Chr18:6980412 | Cma04g01741 | Cma-Chr4:8746724 | 1.02E-12 | wgd | |
Cma04g01741 | Cma-Chr4:8746724 | Cma05g00022 | Cma-Chr5:105423 | 1.49E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34902 | PF01470 | Peptidase_C15 | 3.30E-11 | CL0379 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01741 | K01304 | - | csv:105435561 | 344.354 |