Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00022 ATGTCGTCCACACTGGAACAGCTCCTGCCCGACCCCTCTGAACAGATTCGCTATGTGCAATGTGGTCTTTGTAGCACCATATTGTTGGTAAATGTGCCATACAGCAACTTGTCGATGGTGGTGAGCGTAAGATGCGGCAACTGCACTGGCCTCCTCTCCGTCAACATGGCCAAGCCCTCTTTTATCCCTTTTGATCTTCTCACTTCCCTCTCTCACAACTTGCCAAAGGAGCCTTTCCAAGACTTGAACGTCCAGAAACACTTGTGCTTGGACAACCTCAACAACACGTCCGACCTCCTAACCTCGTACCACAACATTATCCAAAATCACGAAGACGATGATGACGATGCCATCATCATTCCACCCACTCCAGTTGTTAACAAGCCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGGAGGAGATTCGGAGGCTGAAAGCGGAGAACCCGGGAATGGCGCATAAGGAGGCATTCAAGACAGCGGCAAAGAATTGGGCTCATCTCCCTCCAGTCAATGGCGAAGGAGATCACGTGGGGAGGAAGAGAAACGTAATGTGA 576 50.52 MSSTLEQLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVNGEGDHVGRKRNVM 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 105423 106388 - CmaCh05G000220.1 Cma05g00022 294140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00022 191 Gene3D High mobility group box domain 125 179 IPR036910 -
Cma05g00022 191 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Cma05g00022 191 PANTHER AXIAL REGULATOR YABBY 4 1 181 - -
Cma05g00022 191 CDD HMG-box 135 176 - -
Cma05g00022 191 SUPERFAMILY HMG-box 124 176 IPR036910 -
Cma05g00022 191 Pfam YABBY protein 12 177 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01741 Cma05g00022 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00022 Cma-Chr5:105423 Cma11g00536 Cma-Chr11:2583470 3.06E-39 dispersed
Cma04g01741 Cma-Chr4:8746724 Cma05g00022 Cma-Chr5:105423 1.49E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35005 PF04690 YABBY 1.00E-54 CL0114 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00022 K25796 - csv:101211011 316.235