Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00116 ATGGGGAGAGCTCCTTGCTGCGACAAGGCCAACGTTAAGAAAGGGCCATGGTCCCCTGAGGAAGATGCCAAGCTCAAGTCTTACATTGAGAAACATGGAACTGGTGGAAACTGGATTGCTTTGCCCCAAAAGATTGTAGGGCTTAAGAGATGTGGCAAAAGCTGCCGGTTGAGATGGCTCAACTATCTGCGTCCAAACATTAAGCATGGAGGCTTCTCTGAAGAGGAAGATAGAATCATTTGTAGCCTTTATGTTAGTATTGGAAGCAGGTGGTCTATAATTGCAGCACAGTTACCGGGAAGAACAGACAATGACATAAAGAACTATTGGAACACGAGGTTGAAGAAGAAGCTATTTGGGAAGCAGCGGAAAGAGCATCATCATCAACAACAGGCAACTCGTAGAGGAAACGCTCTAAAGCAAATGCAACAAATGAAGAGACCATCAGAGACTAATAATAACACAACAAATTATGGGGCTGAGAACAACAATATTGCCATATTTTCATTAAACGAAGCTCATAACAACATTCCTTATTGGCCTCAGCAGCAGCAGCTCCCTTTGGCACCTCACTACAACCAGGGCAGCTTGCCAGCATCTGATCCAATCAACCCCATTGAAAATCTGAGCAAATTTGGAGGTCAATCCATGGGTGAAGAAAGTGGGTATAGTAATATGAACAACAATGCAAATGGGTATGGCCATTTTTTGCCAATTATGCAAGGGCAAAGCAGTAACCAAATGGTGGAGGTGGAGGTGGAGAATTATAACATGACAGGGTACGAGGATCCGAGGAGGGTTTTATGTGGTCTTGAGTTTCTGTTTGAAGATCATCATCAGATTTTGGGTACCAATGGTCATGGCTGTGAAATGGGGTCTCTCCAGAGTTCTTCTTGCCCGAATTACGAACCTATAATGCTGCAAGATTTACCAACTACTGCTGAACAATATAATGCTAAGTTTGATGACTTGAGGATACTATGA 984 43.39 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIVGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLFGKQRKEHHHQQQATRRGNALKQMQQMKRPSETNNNTTNYGAENNNIAIFSLNEAHNNIPYWPQQQQLPLAPHYNQGSLPASDPINPIENLSKFGGQSMGEESGYSNMNNNANGYGHFLPIMQGQSSNQMVEVEVENYNMTGYEDPRRVLCGLEFLFEDHHQILGTNGHGCEMGSLQSSSCPNYEPIMLQDLPTTAEQYNAKFDDLRIL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 503339 505006 + CmaCh05G001160.1 Cma05g00116 294234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00116 327 Gene3D - 7 69 - -
Cma05g00116 327 PANTHER OS09G0431300 PROTEIN 1 204 - -
Cma05g00116 327 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Cma05g00116 327 PANTHER OS09G0431300 PROTEIN 1 204 - -
Cma05g00116 327 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Cma05g00116 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Cma05g00116 327 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Cma05g00116 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 63 IPR017930 -
Cma05g00116 327 Pfam Myb-like DNA-binding domain 14 63 IPR001005 -
Cma05g00116 327 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Cma05g00116 327 Gene3D - 71 150 - -
Cma05g00116 327 MobiDBLite consensus disorder prediction 119 158 - -
Cma05g00116 327 SMART sant 68 116 IPR001005 -
Cma05g00116 327 SMART sant 13 65 IPR001005 -
Cma05g00116 327 CDD SANT 16 63 IPR001005 -
Cma05g00116 327 CDD SANT 72 114 IPR001005 -
Cma05g00116 327 MobiDBLite consensus disorder prediction 134 158 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00116 Cma12g00246 CCT
Cma05g00116 Cma09g00320 CCT
Cma05g00116 Cma12g00620 CST
Cma01g01777 Cma05g00116 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01385 Cma-Chr2:8056076 Cma05g00116 Cma-Chr5:503339 3.52E-75 dispersed
Cma03g00883 Cma-Chr3:6503496 Cma05g00116 Cma-Chr5:503339 1.99E-83 dispersed
Cma05g00116 Cma-Chr5:503339 Cma07g00624 Cma-Chr7:2704789 1.70E-82 dispersed
Cma01g01763 Cma-Chr1:11853801 Cma05g00116 Cma-Chr5:503339 2.33E-83 wgd
Cma12g00620 Cma-Chr12:3265537 Cma05g00116 Cma-Chr5:503339 9.43E-147 wgd
Cma05g00116 Cma-Chr5:503339 Cma09g00320 Cma-Chr9:1313985 7.57E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35014 PF00249 Myb_DNA-binding 1.80E-13 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00116 K09422 - csv:101203486 469.159