Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00143 | ATGGAGGCTTTGGGAGGTTTTTCGGATGGGGAATGGGAGCCTTTCGCCGCCATGTTCTCATCGGAGGAGGTAGATCAGTCCCATATTCCGATCGCGAATCATGCCGATCCTTCCACTGAGCTTCAATTGCCCAACAATGGCGGCAGCAGCTGGTTCTATTCATTGGACGCTTTTGTTCCCAATTTGCAGAGTTATTGCGTCAAACAGGACACGAGGAGCTGCAGTAGCTGCATTACTACTGATAATTCCCATGCTGCCTTTTTGTTTCCCAATTCTACTGATTTCTTTACGCCAATTGACGAGGGGAATTTTGGGTCCTCGTGGTTTTCTGATGTTTTAATCGAGGAAGTGGATAAGGCTCTCTACACCGCCGCCACCGGTGAAGACTCCAGCACTGAGAGATTCGTCGAGATTAATGTAGTACAAGGTAACTACCCAGCACTGCCGCCGCCATCGCAGCTCGTAGATTCCACTGGTGCCGCGAAGGAACCAATGGCACTGAAAAGGAAAGTCAATAACGAAGATATTTCTGATAATCAGAAGAAGAAAACTCGGGTTTCAGCAGATGGGCAGAAGAAGAAGAAAACAGAGGAAAGAAAGAAAAATGAGAAGAGAAAAGGGAAGAGTGTGGAAGAAGAAGGCAATGCGGGTGGAGCATCAGAAGGGCAGTGCTCCATTAGTTACAGTTCCGATCAGGAAGAAAATGGTTCACAGGAGGGCCAAGGCGCCACCTCCGACGGCGGCTTGATCAGGAAGGGCAGAGCAAGCAGAGGGTCGGCCACAGATCCCCAAAGCCTGTACGCTAGAAAACGAAGGGAGAGAATCAACGAGCGATTAAGAATGTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCTGTTCAGTACGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGCTGTGGATGTTTGCTCCTTTGGCATACAATGGATTGGAGCTTGGGCTTCACCAGAAGCTCTCTCCATTTGGGTCACATTGA | 1038 | 48.17 | MEALGGFSDGEWEPFAAMFSSEEVDQSHIPIANHADPSTELQLPNNGGSSWFYSLDAFVPNLQSYCVKQDTRSCSSCITTDNSHAAFLFPNSTDFFTPIDEGNFGSSWFSDVLIEEVDKALYTAATGEDSSTERFVEINVVQGNYPALPPPSQLVDSTGAAKEPMALKRKVNNEDISDNQKKKTRVSADGQKKKKTEERKKNEKRKGKSVEEEGNAGGASEGQCSISYSSDQEENGSQEGQGATSDGGLIRKGRASRGSATDPQSLYARKRRERINERLRMLQKLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDELWMFAPLAYNGLELGLHQKLSPFGSH | 345 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 640612 | 642014 | - | CmaCh05G001430.1 | Cma05g00143 | 294261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00143 | 345 | CDD | bHLH_AtIND_like | 260 | 322 | - | - | |
| Cma05g00143 | 345 | MobiDBLite | consensus disorder prediction | 220 | 244 | - | - | |
| Cma05g00143 | 345 | MobiDBLite | consensus disorder prediction | 167 | 212 | - | - | |
| Cma05g00143 | 345 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 5 | 342 | - | - | |
| Cma05g00143 | 345 | Pfam | Helix-loop-helix DNA-binding domain | 269 | 309 | IPR011598 | GO:0046983 | |
| Cma05g00143 | 345 | Coils | Coil | 193 | 213 | - | - | |
| Cma05g00143 | 345 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 259 | 320 | IPR036638 | GO:0046983 | |
| Cma05g00143 | 345 | PANTHER | TRANSCRIPTION FACTOR BHLH84-LIKE | 5 | 342 | - | - | |
| Cma05g00143 | 345 | SMART | finulus | 265 | 314 | IPR011598 | GO:0046983 | |
| Cma05g00143 | 345 | MobiDBLite | consensus disorder prediction | 167 | 268 | - | - | |
| Cma05g00143 | 345 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 259 | 308 | IPR011598 | GO:0046983 | |
| Cma05g00143 | 345 | Gene3D | - | 261 | 322 | IPR036638 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma05g00143 | Cma09g00285 | CCT | |
| Cma05g00143 | Cma09g00285 | ECH | |
| Cma05g00143 | Cma12g00596 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00143 | Cma-Chr5:640612 | Cma16g00324 | Cma-Chr16:1521773 | 2.47E-55 | dispersed | |
| Cma11g01701 | Cma-Chr11:11238101 | Cma05g00143 | Cma-Chr5:640612 | 8.94E-53 | wgd | |
| Cma12g00596 | Cma-Chr12:3109902 | Cma05g00143 | Cma-Chr5:640612 | 3.62E-100 | wgd | |
| Cma19g00554 | Cma-Chr19:6318015 | Cma05g00143 | Cma-Chr5:640612 | 7.39E-52 | wgd | |
| Cma04g00451 | Cma-Chr4:2305604 | Cma05g00143 | Cma-Chr5:640612 | 8.50E-52 | wgd | |
| Cma05g00143 | Cma-Chr5:640612 | Cma09g00285 | Cma-Chr9:1167219 | 1.69E-64 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35019 | PF00010 | HLH | 1.30E-08 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00143 | - | - | cmax:111491997 | 668.307 |