Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00206 ATGCCTTTCTTTCACAAAAGCGCTTCAAATTCTCGGCTTCAACAGAAGGCGGCCGATTCTGATTTTTCCGTTGTTCAAACCGAATCGCTTGTTCAGCGGCGGCTCACCAGACAGAGGAAGCTCCGGCATCTTACGGATCGAGAAATTGGCGTTGAACTCCCCCGATCATTTCCCGATTCCCCTGATTTATCTGCAAAGCCTAGATCGCCTCTTGGGGGTTCCGAACGTTGGTCCTCGTCGCCTTTGCCCCAGCCTTTGCCTCTGCCGGAGTTATTTCCGGTTCGGAATCCAGAGTCCGATTCTTGGTTTGCTAGCCAAGGCCGTGTGGTCTCGCCTATTGAAACTCCTGTCCGGAAGAGCTCTGATCGTGCAACAACGAATGTAAATGGAGGTCTGGGCAACAATCAAAGGCGAGTTGCTACAGATTGTAAGTTGGAAGTTGTTAATGGCAATACAGGAGGAACTGGGGCTAACACATTTACAAGCCCTCATAGTCCCTCTGTGAACTCAGGTAAATCCATTTCGATTAAGGAGTTTGTTTTTAGTTGTTTGGATCAGCCTCCAAACAGCAAAGTCAGGGGATCCCCAACTCATCCCAGTATTCGAAGGGGTAACTACAGTTTGACACCTAAGACTTTGTCGTCAAAGAGTGCCCCAACAAGCATTTTACCGAGTCCGACCGCTAGCCCACGAAGATCATATACTGGAGATCTTTTCGTTTCTGGTTTGCCTCGCCATGACTATCAGGAATCTCCTTTCAATAATTCTCCCAGAGTCCCACCCCTTAAGACTCCACACACTTCTCAACCTTCTCCTCTCCATAGCCCGTCCGCTCGAAGTTTCGTAAGCAATCCCAAATCTCCTAACGATGTGAAATTTCCGACGCATTCTAAGTTACAAAAAGATAGTAGTACAGATTGGTCTGAAAACCTCGGTCATGTCAATGCTCATCCATTGCCACTTCCTCCTCCATTAGCACACTCTTCACAATCATCTCCACAGTCCCTTTCGTCGAGCGTTCATCATGTTAATGAGAAGCCATACATTTCATCTACGAAAAGTCGGTGGCAAAAAGGAAAGCTCATTGGACGTGGTACGTTTGGAAGTGTATATCTTGCAACCAACAGTGAAACTGGAGCTTTATGCGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATGTGCTGAAAGTATAAAGCAACTAGAGCAGGAGATTAAAGTTCTCAGTCAACTTAAGCATCCAAATATTGTGCAGTATTATGGAAGCGAAATAATCGATGATCATTTCTATATATATTTGGAGTATGTTTATCCCGGGTCGATAAACAAATACGTTCGTGAACGTTGTGGAGCCATTACAGAATCTATTGTTCGCAATTTCACCCGACATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAAACAATCCACAGGGATATCAAAGGTGCAAACTTGTTAGTTGACTCGTCGGGCGTTGTCAAACTTGCAGATTTCGGGATGGCAAAACATCTGACAGGGCAATATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCGGAGGTCATGAAGGCTGCTATGTTGAAAGATGCCAACCCTAATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCGCCATAATTGAAATGCTGGATGGAAAACCTCCGTGGAGTGAGTTTGAAGGGCATCAAGCCATGTTCAAGGTGTTGAATAAAACCCCGCCTGTCCCGGAAAAGCTATCTCCAGAAGGGAAAGACTTCCTCCAGTGCTGCTTTCAAAGGAATCCAGCTGACAGACCAACAGCCATGGCGCTCCTTGACCATCCTTTCTTAAGATCCTCAAATGACTCGAATATTTCAACCCCCACGTCTGCATTTTTGACAATGAACCGCATGGAAAAACTCTTGAGTCCGAAGGACCACCGTAGTCCCAAAGGAGATCAGGCGCAAAACTCTTCTGGAACTTTGGCTGAAAATGTTTATCTGTCGTGCCGTAGCCCTTCAACGAACATTTCAAGCAATATTCCTGCCAGTGCCGTTAACAACCATCCCTTTGCTGTTTCAAGGACTCATAAAAGGGAAGTGCCTCACCTCTGA 2112 45.98 MPFFHKSASNSRLQQKAADSDFSVVQTESLVQRRLTRQRKLRHLTDREIGVELPRSFPDSPDLSAKPRSPLGGSERWSSSPLPQPLPLPELFPVRNPESDSWFASQGRVVSPIETPVRKSSDRATTNVNGGLGNNQRRVATDCKLEVVNGNTGGTGANTFTSPHSPSVNSGKSISIKEFVFSCLDQPPNSKVRGSPTHPSIRRGNYSLTPKTLSSKSAPTSILPSPTASPRRSYTGDLFVSGLPRHDYQESPFNNSPRVPPLKTPHTSQPSPLHSPSARSFVSNPKSPNDVKFPTHSKLQKDSSTDWSENLGHVNAHPLPLPPPLAHSSQSSPQSLSSSVHHVNEKPYISSTKSRWQKGKLIGRGTFGSVYLATNSETGALCAMKEVDLIPDDPKCAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIDDHFYIYLEYVYPGSINKYVRERCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVMKAAMLKDANPNLALAVDIWSLGCAIIEMLDGKPPWSEFEGHQAMFKVLNKTPPVPEKLSPEGKDFLQCCFQRNPADRPTAMALLDHPFLRSSNDSNISTPTSAFLTMNRMEKLLSPKDHRSPKGDQAQNSSGTLAENVYLSCRSPSTNISSNIPASAVNNHPFAVSRTHKREVPHL 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 874311 878220 - CmaCh05G002060.1 Cma05g00206 294324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00206 703 MobiDBLite consensus disorder prediction 118 135 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 7 23 - -
Cma05g00206 703 SUPERFAMILY Protein kinase-like (PK-like) 331 653 IPR011009 -
Cma05g00206 703 SMART serkin_6 356 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00206 703 MobiDBLite consensus disorder prediction 44 84 - -
Cma05g00206 703 Gene3D Transferase(Phosphotransferase) domain 1 352 656 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 116 135 - -
Cma05g00206 703 ProSiteProfiles Protein kinase domain profile. 356 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00206 703 MobiDBLite consensus disorder prediction 248 294 - -
Cma05g00206 703 Pfam Protein kinase domain 357 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00206 703 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Cma05g00206 703 MobiDBLite consensus disorder prediction 328 344 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 185 344 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 1 23 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 188 234 - -
Cma05g00206 703 PANTHER - 1 693 - -
Cma05g00206 703 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 693 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00206 Cma12g00514 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00206 Cma-Chr5:874311 Cma16g00114 Cma-Chr16:522963 3.82E-109 dispersed
Cma12g00514 Cma-Chr12:2651023 Cma05g00206 Cma-Chr5:874311 0 wgd
Cma03g00991 Cma-Chr3:6986502 Cma05g00206 Cma-Chr5:874311 3.12E-156 wgd
Cma05g00206 Cma-Chr5:874311 Cma07g00720 Cma-Chr7:3172737 2.35E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68570 PF00069 Pkinase 3.90E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00206 - - cmo:103487921 1077.39