Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00216 ATGCCAAGAAAATTCATCAATTTCCCACAAAATTCAATCCAAACACCAATATTTTTACTTCTTCTAGCGTTAACACTCAAAGCAGAGGCTGAATGTTCAAAATCATGTAGTCCCAACCACATCCCATATGATTTTCCCTACCCATTCGGCTTCTCCGCCGGCTGCGCAATCCGCTTGGACTGCAATCACGACGGCGCCGCCACGATCGGGGAATTCCCTGTCCAATTAATCAACTCCGACCACATCAAAGTCGTTATCAAAGCCAAATGCAACCGCCGTTTGCACACAATCCGCCAATTCTTCAGCCCCCACTACGCCCCAACGGCCAACAACGCCATTCTTTTACAAAACTGTTCGTCTCCGATTTCGACTTGCCTTTTACCCACCACGATGGTTCAGACCAAATTCGAATCCCCCGATTGCTCTGTTAATCGCACTAGCATAAGCTGCTACACCCAAAACAACACCGCTTCCGCCGCTTTCTTGGACTTCAAAAACCTCACCGGAACCAACTGCGATTACCTTCTCTCGTCCATTTCCGCGGAGGCGCTCAACAGCAACACCTCTGCTGGAATTTCTCTGGAGATTCAGACTGTGGATCTGGGTTGGTGGCTGCAGGGGCCCTGCCGCCAGTCCTGCCATAAAGATGCTAACTGTACGGAGCTTATATCGCCGAGTGACGGGAAGCTGTCTCATCGGTGCCGCTGCCGGGAAGGGTTGGTCGGCGACGGGTATTTGACCGGCACTGGCTGCCGGAAAGCTTCAAATTGCTATGCCACTAAGTACACTCTCGCCCAATGCGGAACATCAACAACTGCCACAAGAACCGCCGTCCTCGTCGGAACTATAATCGCCGGAGCCTTCCTCCTCGTTACTCTCCTTCTATTCTGCTGCTTCATCCGCCGTCGTTCCAATCTCAAATCTATACACCTCAACAAAATCACCAAACGCCGCCTCGCAGAAGCCACAACCGACGCCGGCGTATCCACCATCCACCTCTACACCTACAAAGAGATCCTAAAAGCCACCCATAACTTCTCCGAGGACTACCGCCTTGGCACCGGCGCATACGCCTCCGTCTACGTCGGGAAATTACGCGGCGAATGGGTCGCAATTAAACGCCTAAAAAATCGAGACCCCGATACTATCCAACAAGTTTTAAACGAAATCAACCTCATCTCATCTGTCAGCCACCCTAACCTCGTCCGCCTCCTTGGCTGCTCCATGGAATCCGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGCACTCTGTTCCAACATTTACAGAAACAGAGGGGCACCGGCCTCCCCTGGCTTGTCCGCCTCAATATCGCCGTCGAAACCGCTAATGCAATCGCTCATCTCCATTCTGCAATTAACCATCCGATCTTCCACAGAGACATTAAATCCAGTAACATATTACTTGATCATAATCTCAAATCGAAAGTGGCGGATTTCGGGCTTTCGAGATTGGGGATGGCCGAAATTTCTCACATTTCCACGGCGCCTCAGGGGACACCGGGATATCTCGATCCGCAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTAGTCCTTGTCGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGCCGAAAGACGAGGTCAATTTGGCCGGTCTGGCAGTCGATCGGATCGGGAATGGGCAGCTGAGAGTAATTGTTGACCCGTTAATGGAGATGGAGTTAGACGAATGGGGAAGTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCCTGGCGTTTAATCGGGATGTAAGACCGTCGATGGTAGAGGTGGCGGCGGAGCTGGAGGAGATACGGCGGAGCAGGTGGGATAAAGGGGGAGTGAAGTGTAAGGAAATAGTTGAAAGTGGAAGCTGGAAGTCTAGCCATGGAGGAGGGGATTACTTTTCCAGAGGCTCAGTCCAAGATTCGTGGCAGAGTGAACCGAGCTCACCATCTTCCAATAGTTTGTTAAATAATATTCCTTTATGA 2037 51.4 MPRKFINFPQNSIQTPIFLLLLALTLKAEAECSKSCSPNHIPYDFPYPFGFSAGCAIRLDCNHDGAATIGEFPVQLINSDHIKVVIKAKCNRRLHTIRQFFSPHYAPTANNAILLQNCSSPISTCLLPTTMVQTKFESPDCSVNRTSISCYTQNNTASAAFLDFKNLTGTNCDYLLSSISAEALNSNTSAGISLEIQTVDLGWWLQGPCRQSCHKDANCTELISPSDGKLSHRCRCREGLVGDGYLTGTGCRKASNCYATKYTLAQCGTSTTATRTAVLVGTIIAGAFLLVTLLLFCCFIRRRSNLKSIHLNKITKRRLAEATTDAGVSTIHLYTYKEILKATHNFSEDYRLGTGAYASVYVGKLRGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLFQHLQKQRGTGLPWLVRLNIAVETANAIAHLHSAINHPIFHRDIKSSNILLDHNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKDEVNLAGLAVDRIGNGQLRVIVDPLMEMELDEWGSSSVEKVGEVAFRCLAFNRDVRPSMVEVAAELEEIRRSRWDKGGVKCKEIVESGSWKSSHGGGDYFSRGSVQDSWQSEPSSPSSNSLLNNIPL 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 911920 914485 + CmaCh05G002160.1 Cma05g00216 294334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00216 678 MobiDBLite consensus disorder prediction 654 678 - -
Cma05g00216 678 Pfam Protein kinase domain 348 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00216 678 Gene3D Phosphorylase Kinase; domain 1 316 420 - -
Cma05g00216 678 Gene3D Laminin 210 247 - -
Cma05g00216 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Cma05g00216 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 635 IPR045274 GO:0007166
Cma05g00216 678 SMART serkin_6 346 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00216 678 Gene3D Transferase(Phosphotransferase) domain 1 421 635 - -
Cma05g00216 678 ProSitePatterns Protein kinases ATP-binding region signature. 352 373 IPR017441 GO:0005524
Cma05g00216 678 ProSiteProfiles Protein kinase domain profile. 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00216 678 SUPERFAMILY Protein kinase-like (PK-like) 328 618 IPR011009 -
Cma05g00216 678 MobiDBLite consensus disorder prediction 640 678 - -
Cma05g00216 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 27 635 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00216 Cma12g00502 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00216 Cma-Chr5:911920 Cma01g00400 Cma-Chr1:2027839 6.96E-93 dispersed
Cma08g00161 Cma-Chr8:881126 Cma05g00216 Cma-Chr5:911920 8.65E-53 dispersed
Cma12g00503 Cma-Chr12:2605230 Cma05g00216 Cma-Chr5:911920 1.13E-133 transposed
Cma12g00502 Cma-Chr12:2602510 Cma05g00216 Cma-Chr5:911920 0 wgd
Cma03g01017 Cma-Chr3:7079778 Cma05g00216 Cma-Chr5:911920 8.24E-173 wgd
Cma05g00216 Cma-Chr5:911920 Cma07g00735 Cma-Chr7:3250356 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68571 PF00069 Pkinase 4.30E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00216 - - csv:101218893 1111.29