Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00279 ATGCAGGTTCGTGATGCGTATCCATTTGGTGTGGATCCGAAGTGGCAAGGCACTCTAAGAGTAGCTCAAATGAACAGAGGAATTATATTGAGCCACTTCAAAGCAAAATTCTTTGGAGAAAACATTAACATCTGGTACCAATTTGTTCCACAGATGATTTTCATGAACAGTTTATGCGGTTACCTCTCACTTCTCATAATCGTAAAGCGGTGCTCTGGATCTCAAGCTCTGTATCACTTTCTAAAACAGCTTCCTATCTACACGCCTATGGGCCCTCGGTCACTCAGCCAAGCGCATTCGGAGTTCTCGAGTGTATTTTACGACAAGGTTCTGCTCCTAGCTTGGGGGTTCAATAGTTTGATCATCCGAATGGTGTAG 378 43.92 MQVRDAYPFGVDPKWQGTLRVAQMNRGIILSHFKAKFFGENINIWYQFVPQMIFMNSLCGYLSLLIIVKRCSGSQALYHFLKQLPIYTPMGPRSLSQAHSEFSSVFYDKVLLLAWGFNSLIIRMV 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1187764 1189881 - CmaCh05G002790.1 Cma05g00279 294397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00279 125 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 94 125 - -
Cma05g00279 125 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 2 81 - -
Cma05g00279 125 PANTHER VACUOLAR PROTON ATPASES 94 125 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma05g00279 125 PANTHER VACUOLAR PROTON ATPASES 2 81 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma05g00279 125 Pfam V-type ATPase 116kDa subunit family 5 75 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00279 Cma12g00431 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00279 Cma-Chr5:1187764 Cma20g00461 Cma-Chr20:2208366 2.72E-08 dispersed
Cma11g01088 Cma-Chr11:5976677 Cma05g00279 Cma-Chr5:1187764 9.24E-06 wgd
Cma12g00431 Cma-Chr12:2249053 Cma05g00279 Cma-Chr5:1187764 2.82E-08 wgd
Cma19g00683 Cma-Chr19:7079317 Cma05g00279 Cma-Chr5:1187764 2.03E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00279 K02154 - pop:7490678 122.864